Lawson-Michod Katherine A, Johnson Courtney E, Barnard Mollie E, Davidson Natalie, Collin Lindsay J, Nix David A, Huff Chad, Berchuck Andy, Salas Lucas A, Greene Casey, Marks Jeffrey R, Peres Lauren C, Doherty Jennifer A, Schildkraut Joellen M
Huntsman Cancer Institute, Salt Lake City, UT, USA.
Department of Population Health Sciences at the Spencer Fox Eccles School of Medicine, University of Utah, Salt Lake City, UT, USA.
medRxiv. 2025 Jan 28:2025.01.21.25320918. doi: 10.1101/2025.01.21.25320918.
Approximately half of ovarian high-grade serous carcinomas (HGSC) have homologous recombination deficiency (HRD). However, HRD is not well-characterized in Black individuals.
To characterize HGSC HRD by self-reported race and evaluate whether differences in HRD are associated with ovarian cancer mortality.
Cohort study using data collected from two population-based case-control studies of ovarian cancer. Cases were selected based on self-reported race (178 Black, 123 White) and pathologically-confirmed HGSC.
HRD features identified using matched tumor-normal whole-exome DNA sequencing and categorized as germline or somatic variants in homologous recombination pathway genes, or the SBS3 HRD-associated signature.
Median difference and 95% confidence intervals (CI) for age at diagnosis and tumor mutation burden, and age and stage-adjusted hazard ratios (HR) and 95%CIs for survival, comparing individuals with an HRD feature to those without, separately by self-reported race.
More of the germline and somatic variants detected among Black individuals compared with White individuals were unannotated or variants of uncertain significance (VUS; germline 65% versus 45%; somatic 62% versus 50%, respectively). While the prevalences of many HRD features were similar between Black individuals and White individuals, Black individuals had a higher prevalence of the HRD signature identified using de novo mutational signature analysis (40% versus 29%) and germline variants (8% versus 2%) compared with White individuals. We observed that among Black individuals, variants were associated with better survival (somatic HR=0.23, 95%CI 0.07-0.76; germline HR=0.48, 95%CI 0.22-1.03), while germline variants were associated with worse survival (HR=2.11, 95%CI 1.14-3.88). When we restricted to VUS and unannotated variants, we observed similar associations with survival for 2 among Black individuals (somatic HR=0.18, 95%CI 0.04-0.75; germline HR=0.40, 95%CI 0.15-1.09).
HRD testing informs precision-based medicine approaches that improve outcomes, but a higher proportion of VUS among Black individuals may complicate referral for such care. Our findings emphasize the importance of recruiting diverse individuals in genomics research and better characterizing VUS.
大约一半的卵巢高级别浆液性癌(HGSC)存在同源重组缺陷(HRD)。然而,HRD在黑人个体中的特征尚未得到充分描述。
根据自我报告的种族对HGSC的HRD进行特征描述,并评估HRD的差异是否与卵巢癌死亡率相关。
队列研究,使用从两项基于人群的卵巢癌病例对照研究中收集的数据。病例根据自我报告的种族(178名黑人,123名白人)和病理确诊的HGSC进行选择。
使用匹配的肿瘤-正常全外显子DNA测序确定的HRD特征,并分类为同源重组途径基因中的种系或体细胞变异,或SBS3 HRD相关特征。
比较有HRD特征的个体与无HRD特征的个体,按自我报告的种族分别计算诊断年龄和肿瘤突变负担的中位数差异及95%置信区间(CI),以及年龄和分期调整后的生存风险比(HR)及95%CI。
与白人个体相比,在黑人个体中检测到的更多种系和体细胞变异未被注释或为意义不确定的变异(VUS;种系变异分别为65%对45%;体细胞变异分别为62%对50%)。虽然许多HRD特征在黑人个体和白人个体中的患病率相似,但与白人个体相比,使用从头突变特征分析确定的HRD特征(40%对29%)和种系变异(8%对2%)在黑人个体中的患病率更高。我们观察到,在黑人个体中,体细胞变异与更好的生存相关(HR=0.23,95%CI 0.07-0.76;种系变异HR=0.48,95%CI 0.22-1.03),而种系变异与更差的生存相关(HR=2.11,95%CI 1.14-3.88)。当我们仅限于VUS和未注释的变异时,我们在黑人个体中观察到体细胞变异与生存的类似关联(HR=0.18,95%CI 0.04-0.75;种系变异HR=0.40,95%CI 0.15-1.09)。
HRD检测为改善预后的精准医学方法提供了依据,但黑人个体中VUS的比例较高可能会使此类治疗的转诊复杂化。我们的研究结果强调了在基因组学研究中招募多样化个体以及更好地描述VUS的重要性。