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1
Birth and death processes in phylogenetics and population genetics.
Philos Trans R Soc Lond B Biol Sci. 2025 Feb 13;380(1919):20230300. doi: 10.1098/rstb.2023.0300. Epub 2025 Feb 20.
2
Reading Yule in light of the history and present of macroevolution.
Philos Trans R Soc Lond B Biol Sci. 2025 Feb 13;380(1919):20230299. doi: 10.1098/rstb.2023.0299. Epub 2025 Feb 20.
3
The probability of monophyly of a sample of gene lineages on a species tree.
Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):8002-9. doi: 10.1073/pnas.1601074113. Epub 2016 Jul 18.
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Salvador Luria and Max Delbrück on Random Mutation and Fluctuation Tests.
Genetics. 2016 Feb;202(2):367-8. doi: 10.1534/genetics.115.186163.
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The inference of gene trees with species trees.
Syst Biol. 2015 Jan;64(1):e42-62. doi: 10.1093/sysbio/syu048. Epub 2014 Jul 28.
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Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies.
Theor Popul Biol. 2013 Dec;90:113-28. doi: 10.1016/j.tpb.2013.10.002. Epub 2013 Oct 21.
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Uncovering the role of elementary processes in network evolution.
Sci Rep. 2013 Oct 10;3:2920. doi: 10.1038/srep02920.
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Viral phylodynamics.
PLoS Comput Biol. 2013;9(3):e1002947. doi: 10.1371/journal.pcbi.1002947. Epub 2013 Mar 21.
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Unified modeling of gene duplication, loss, and coalescence using a locus tree.
Genome Res. 2012 Apr;22(4):755-65. doi: 10.1101/gr.123901.111. Epub 2012 Jan 23.
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Trees within trees: phylogeny and historical associations.
Trends Ecol Evol. 1998 Sep 1;13(9):356-9. doi: 10.1016/s0169-5347(98)01438-4.

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