Suppr超能文献

PK1910菌株的全基因组序列

Complete genome sequence of strain PK1910.

作者信息

Naumann Allison A, Siddiqui Danyal, Kerns Kristopher A, Hendrickson Erik L, Kotsakis Georgios A, McLean Jeffrey S

机构信息

Department of Periodontics, University of Washington, Seattle, Washington, USA.

Department of Oral Biology & Clinical Research Center, Rutgers School of Dental Medicine, Newark, New Jersey, USA.

出版信息

Microbiol Resour Announc. 2025 Apr 10;14(4):e0076124. doi: 10.1128/mra.00761-24. Epub 2025 Feb 25.

DOI:10.1128/mra.00761-24
PMID:39998189
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11984120/
Abstract

Here, we announce the complete genome sequence of strain PK1910, obtained from a frozen stock. The genome is composed of one closed contig with a length of 2,213,486 bp, resulting in 98.0× coverage containing 1,979 protein-coding genes, with a GC content of 38.74%.

摘要

在此，我们公布从冻存菌株中获得的PK1910菌株的完整基因组序列。该基因组由一个长度为2,213,486 bp的封闭重叠群组成，覆盖率为98.0×，包含1,979个蛋白质编码基因，GC含量为38.74%。

相似文献

1
Complete genome sequence of strain PK1910.
Microbiol Resour Announc. 2025 Apr 10;14(4):e0076124. doi: 10.1128/mra.00761-24. Epub 2025 Feb 25.
2
Genetic transformation of Veillonella parvula.
FEMS Microbiol Lett. 2011 Sep;322(2):138-44. doi: 10.1111/j.1574-6968.2011.02344.x. Epub 2011 Jul 18.
3
High-Quality Draft Genome Sequence of Low-pH-Active Veillonella parvula Strain SHI-1, Isolated from Human Saliva within an In Vitro Oral Biofilm Model.
Genome Announc. 2016 Feb 18;4(1):e01684-15. doi: 10.1128/genomeA.01684-15.
4
Complete genome sequence of Veillonella parvula type strain (Te3).
Stand Genomic Sci. 2010 Jan 28;2(1):57-65. doi: 10.4056/sigs.521107.
5
Autotransporters Drive Biofilm Formation and Autoaggregation in the Diderm Firmicute Veillonella parvula.
J Bacteriol. 2020 Oct 8;202(21). doi: 10.1128/JB.00461-20.
6
Characterization of a Streptococcus sp.-Veillonella sp. community micromanipulated from dental plaque.
J Bacteriol. 2008 Dec;190(24):8145-54. doi: 10.1128/JB.00983-08. Epub 2008 Sep 19.
7
Culture-independent detection of Eikenella corrodens and Veillonella parvula in primary endodontic infections.
J Endod. 2006 Jun;32(6):509-12. doi: 10.1016/j.joen.2005.07.004.
8
A peptide coating preventing the attachment of Porphyromonas gingivalis on the surfaces of dental implants.
J Periodontal Res. 2020 Aug;55(4):503-510. doi: 10.1111/jre.12737. Epub 2020 Feb 24.
9
Effect of Veillonella parvula on the antimicrobial resistance and gene expression of Streptococcus mutans grown in a dual-species biofilm.
Oral Microbiol Immunol. 2008 Jun;23(3):183-9. doi: 10.1111/j.1399-302X.2007.00409.x.
10
Draft Genome Sequence of Veillonella parvula HSIVP1, Isolated from the Human Small Intestine.
Genome Announc. 2013 Dec 5;1(6):e00977-13. doi: 10.1128/genomeA.00977-13.

本文引用的文献

1
Polypolish: Short-read polishing of long-read bacterial genome assemblies.
PLoS Comput Biol. 2022 Jan 24;18(1):e1009802. doi: 10.1371/journal.pcbi.1009802. eCollection 2022 Jan.
2
Memory-Efficient Assembly Using Flye.
IEEE/ACM Trans Comput Biol Bioinform. 2022 Nov-Dec;19(6):3564-3577. doi: 10.1109/TCBB.2021.3108843. Epub 2022 Dec 8.
3
Titanium as a modifier of the peri-implant microbiome structure.
Clin Implant Dent Relat Res. 2018 Dec;20(6):945-953. doi: 10.1111/cid.12676. Epub 2018 Sep 25.
4
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.
Bioinformatics. 2016 Jul 15;32(14):2103-10. doi: 10.1093/bioinformatics/btw152. Epub 2016 Mar 19.
5
Genetic transformation of Veillonella parvula.
FEMS Microbiol Lett. 2011 Sep;322(2):138-44. doi: 10.1111/j.1574-6968.2011.02344.x. Epub 2011 Jul 18.
6
Fast and accurate short read alignment with Burrows-Wheeler transform.
Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18.
7
Characterization of Veillonella atypica PK1910 adhesin-mediated coaggregation with oral Streptococcus spp.
Infect Immun. 1992 Mar;60(3):1178-86. doi: 10.1128/iai.60.3.1178-1186.1992.

文献AI研究员

20分钟写一篇综述，助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型，支持多种主流文档格式。

立即体验