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Identification of Common Angiogenesis Marker Genes in Chronic Lung Diseases and Their Relationship with Immune Infiltration Based on Bioinformatics Approaches.

作者信息

Liu Lu, Wang Man, Yu Shihuan

机构信息

Department of Respiratory Medicine, the First Affiliated Hospital of Harbin Medical University, Harbin 150001, China.

出版信息

Biomedicines. 2025 Jan 31;13(2):331. doi: 10.3390/biomedicines13020331.


DOI:10.3390/biomedicines13020331
PMID:40002743
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11852874/
Abstract

This study aims to explore the role of angiogenesis-related genes in chronic lung diseases (ILD and COPD) using bioinformatics methods, with the goal of identifying novel therapeutic targets to slow disease progression and prevent its deterioration into fibrosis or pulmonary artery hypertension. The research methods encompassed differential analysis, WGCNA (Weighted Gene Co-expression Network Analysis), and multiple machine learning approaches to screen for key genes. Gene Set Enrichment Analysis (GSEA), Gene Ontology (GO), and the Kyoto Encyclopedia of Genes and Genomes (KEGG) were utilized to assess related biological functions and pathways. Additionally, immune cell infiltration was analyzed to evaluate the immune status of the disease and the correlation between genes and immunity. COPD and ILD are closely associated with pathways related to angiogenesis, immune responses, and others, with differential genes in both groups linked to inflammation-related signaling pathways. The study established a chronic lung disease-related gene set comprising 171 genes and further screened out 21 genes related to angiogenesis. Ultimately, four key genes-, , , and -were identified through machine learning methods. These four genes are closely related to angiogenesis and immune processes, and clustering analysis based on them can reflect different disease states and variations in immune cell infiltration. , , , and represent potential therapeutic targets for slowing the progression of chronic lung diseases and preventing their deterioration. Furthermore, monocytes exhibited consistent infiltration patterns across disease and control groups, as well as among different subgroups, suggesting their potential significant role in the development of chronic lung diseases.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/a8a7e8d0f16c/biomedicines-13-00331-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/3c1a60bb00d0/biomedicines-13-00331-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/47945eacb8fc/biomedicines-13-00331-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/5f1eba8e0900/biomedicines-13-00331-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/f0f09d8054d7/biomedicines-13-00331-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/a6f5b2c507cb/biomedicines-13-00331-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/1237447ad667/biomedicines-13-00331-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/2c09ecf3e57a/biomedicines-13-00331-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/68f462202252/biomedicines-13-00331-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/a8a7e8d0f16c/biomedicines-13-00331-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/3c1a60bb00d0/biomedicines-13-00331-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/47945eacb8fc/biomedicines-13-00331-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/5f1eba8e0900/biomedicines-13-00331-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/f0f09d8054d7/biomedicines-13-00331-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/a6f5b2c507cb/biomedicines-13-00331-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/1237447ad667/biomedicines-13-00331-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/2c09ecf3e57a/biomedicines-13-00331-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/68f462202252/biomedicines-13-00331-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac0b/11852874/a8a7e8d0f16c/biomedicines-13-00331-g009.jpg

相似文献

[1]
Identification of Common Angiogenesis Marker Genes in Chronic Lung Diseases and Their Relationship with Immune Infiltration Based on Bioinformatics Approaches.

Biomedicines. 2025-1-31

[2]
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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
Immune infiltration landscape and immune-marker molecular typing of pulmonary fibrosis with pulmonary hypertension.

BMC Pulm Med. 2021-11-25

本文引用的文献

[1]
Computational deconvolution of cell type-specific gene expression in COPD and IPF lungs reveals disease severity associations.

BMC Genomics. 2024-12-18

[2]
Oncogenic mechanisms of COL10A1 in cancer and clinical challenges (Review).

Oncol Rep. 2024-12

[3]
GCN2 kinase activation mediates pulmonary vascular remodeling and pulmonary arterial hypertension.

JCI Insight. 2024-9-24

[4]
Adipose-derived mesenchymal stem cell therapy for connective tissue diseases and complications.

Inflamm Regen. 2024-7-19

[5]
Identifying potential targets for preventing cancer progression through the PLA2G1B recombinant protein using bioinformatics and machine learning methods.

Int J Biol Macromol. 2024-9

[6]
Sangerbox: A comprehensive, interaction-friendly clinical bioinformatics analysis platform.

Imeta. 2022-7-8

[7]
Type X collagen knockdown inactivate ITGB1/PI3K/AKT to suppress chronic unpredictable mild stress-stimulated triple-negative breast cancer progression.

Int J Biol Macromol. 2024-7

[8]
The role of vasculature and angiogenesis in respiratory diseases.

Angiogenesis. 2024-8

[9]
Akt3 activation by R-Ras in an endothelial cell enforces quiescence and barrier stability of neighboring endothelial cells via Jagged1.

Cell Rep. 2024-3-26

[10]
Identifying potential biomarkers of idiopathic pulmonary fibrosis through machine learning analysis.

Sci Rep. 2023-10-2

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