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在基因组最小化菌株中实现抗体生产。

Toward Antibody Production in Genome-Minimized Strains.

作者信息

Schilling Tobias, Biedendieck Rebekka, Moran-Torres Rafael, Saaranen Mirva J, Ruddock Lloyd W, Daniel Rolf, van Dijl Jan Maarten

机构信息

University Medical Center Groningen, Department of Medical Microbiology, University of Groningen, Hanzeplein 1, P.O. Box 30001, 9700RB Groningen, The Netherlands.

Braunschweig Centre of Systems Biology (BRICS) and Institute of Microbiology, Technische Universität Braunschweig, Rebenring 56, 38106 Braunschweig, Germany.

出版信息

ACS Synth Biol. 2025 Mar 21;14(3):740-755. doi: 10.1021/acssynbio.4c00688. Epub 2025 Feb 27.

DOI:10.1021/acssynbio.4c00688
PMID:40013841
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11934139/
Abstract

is a bacterial cell factory with outstanding protein secretion capabilities that has been deployed as a workhorse for the production of industrial enzymes for more than a century. Nevertheless, the production of other proteins with , such as antibody formats, has thus far been challenging due to specific requirements that relate to correct protein folding and disulfide bond formation upon export from the cytoplasm. In the present study, we explored the possibility of producing functional antibody formats, such as scFvs and scFabs, using the genome-reduced - and strain lineage. The applied workflow included selection of optimal chassis strains, appropriate expression vectors, signal peptides, growth media, and analytical methods to verify the functionality of the secreted antibody fragments. The production of scFv fragments was upscaled to the 1 L bioreactor level. As demonstrated for a human C-reactive protein-binding scFv antibody by mass spectrometry, biolayer interferometry, circular dichroism, free thiol cross-linking with -ethylmaleimide, and nano-differential scanning fluorimetry, strains can secrete fully functional, natively folded, disulfide-bonded, and thermostable antibody fragments. We therefore conclude that genome-reduced chassis strains are capable of secreting high-quality antibody fragments.

摘要

是一种具有出色蛋白质分泌能力的细菌细胞工厂,在一个多世纪以来一直被用作生产工业酶的主力。然而,由于从细胞质中输出时与正确的蛋白质折叠和二硫键形成相关的特定要求,迄今为止,生产其他蛋白质,如抗体形式,一直具有挑战性。在本研究中,我们探索了使用基因组简化的 菌株谱系生产功能性抗体形式,如单链抗体片段(scFvs)和单链抗体(scFabs)的可能性。应用的工作流程包括选择最佳底盘菌株、合适的表达载体、信号肽、生长培养基以及验证分泌抗体片段功能的分析方法。单链抗体片段(scFv)的生产规模扩大到了1 L生物反应器水平。通过质谱、生物层干涉术、圆二色性、与N - 乙基马来酰亚胺的游离巯基交联以及纳米差示扫描荧光法对人C反应蛋白结合单链抗体片段(scFv)抗体的验证表明, 菌株能够分泌功能完全正常、天然折叠、具有二硫键且热稳定的抗体片段。因此,我们得出结论,基因组简化的 底盘菌株能够分泌高质量的抗体片段。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/ff2126cee775/sb4c00688_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/303858eef1be/sb4c00688_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/5397fefea3c9/sb4c00688_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/9e71cb1f314e/sb4c00688_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/015ac28d96f6/sb4c00688_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/f9ff687ab456/sb4c00688_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/ff2126cee775/sb4c00688_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/303858eef1be/sb4c00688_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/5397fefea3c9/sb4c00688_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/9e71cb1f314e/sb4c00688_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/015ac28d96f6/sb4c00688_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/f9ff687ab456/sb4c00688_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c50/11934139/ff2126cee775/sb4c00688_0006.jpg

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本文引用的文献

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Thermostability and binding properties of single-chained Fv fragments derived from therapeutic antibodies.治疗性抗体单链 Fv 片段的热稳定性和结合特性。
Protein Sci. 2024 Jul;33(7):e5084. doi: 10.1002/pro.5084.
2
Post-translational secretion stress regulation in Bacillus subtilis is controlled by intra- and extracellular proteases.枯草芽孢杆菌中转译后分泌压力的调控是由胞内和胞外蛋白酶控制的。
N Biotechnol. 2024 Mar 25;79:71-81. doi: 10.1016/j.nbt.2023.12.009. Epub 2023 Dec 27.
3
Let There Be Light: Genome Reduction Enables to Produce Disulfide-Bonded Luciferase.
让光明重现:基因组缩减使能够产生二硫键结合的荧光素酶。
ACS Synth Biol. 2023 Dec 15;12(12):3656-3668. doi: 10.1021/acssynbio.3c00444. Epub 2023 Nov 27.
4
Enhancing bacterial fitness and recombinant enzyme yield by engineering the quality control protease HtrA of .通过工程改造质量控制蛋白酶 HtrA 提高细菌适应性和重组酶产量。
Microbiol Spectr. 2023 Dec 12;11(6):e0177823. doi: 10.1128/spectrum.01778-23. Epub 2023 Oct 11.
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Bacillus subtilis, a Swiss Army Knife in Science and Biotechnology.枯草芽孢杆菌:科学与生物技术领域的瑞士军刀。
J Bacteriol. 2023 May 25;205(5):e0010223. doi: 10.1128/jb.00102-23. Epub 2023 May 4.
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Sci Rep. 2023 Mar 16;13(1):4408. doi: 10.1038/s41598-023-31369-2.
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Signal Peptide Efficiency: From High-Throughput Data to Prediction and Explanation.信号肽效率:从高通量数据到预测和解释。
ACS Synth Biol. 2023 Feb 17;12(2):390-404. doi: 10.1021/acssynbio.2c00328. Epub 2023 Jan 17.
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UniProt: the Universal Protein Knowledgebase in 2023.UniProt:2023 年的通用蛋白质知识库。
Nucleic Acids Res. 2023 Jan 6;51(D1):D523-D531. doi: 10.1093/nar/gkac1052.
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Microbial protein cell factories fight back?微生物蛋白细胞工厂奋起反抗?
Trends Biotechnol. 2022 May;40(5):576-590. doi: 10.1016/j.tibtech.2021.10.003. Epub 2021 Dec 16.
10
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