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The endogenous antigen-specific CD8 T cell repertoire is composed of unbiased and biased clonotypes with differential fate commitments.

作者信息

Abdullah Leena, Emiliani Francesco E, Vaidya Chinmay M, Stuart Hannah, Musial Shawn C, Kolling Fred W, Obar Joshua J, Rosato Pamela C, Ackerman Margaret E, Song Li, McKenna Aaron, Huang Yina H

机构信息

Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Lebanon, NH 03756, USA.

Department of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Lebanon, NH 03756, USA.

出版信息

Immunity. 2025 Mar 11;58(3):601-615.e9. doi: 10.1016/j.immuni.2025.02.001. Epub 2025 Feb 27.


DOI:10.1016/j.immuni.2025.02.001
PMID:40020673
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11903169/
Abstract

Generating balanced populations of CD8 effector and memory T cells is necessary for immediate and durable immunity to infections and cancer. Yet, a definitive understanding of how a diverse CD8 T cell repertoire differentiates remains unclear. We identified several hundred T cell receptor (TCR) clonotypes that constitute the polyclonal response against a single antigen and found that a majority of TCR clonotypes were highly biased toward memory or effector fates. TCR-intrinsic biases were not stochastic and were dominant over environmental cues. Differential gene expression analysis of memory- or effector-biased TCR clonotypes showed bifurcation of differential fates at the early effector stage. Additionally, phylogenetic analysis revealed that memory-biased clonotypes retain their fate preferences in subclonal populations but effector-biased subclones can switch to a memory fate. Our study highlights that the polyclonal CD8 T cell response is a composite of unbiased and biased clonotypes with varying capacity to incorporate environmental cues in their cell fate decisions.

摘要

相似文献

[1]
The endogenous antigen-specific CD8 T cell repertoire is composed of unbiased and biased clonotypes with differential fate commitments.

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[2]
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[3]
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[7]
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[9]
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本文引用的文献

[1]
Recruitment of epitope-specific T cell clones with a low-avidity threshold supports efficacy against mutational escape upon re-infection.

Immunity. 2023-6-13

[2]
Simulation-based inference of differentiation trajectories from RNA velocity fields.

Cell Rep Methods. 2022-12-19

[3]
Single-cell fate mapping reveals widespread clonal ignorance of low-affinity T cells exposed to systemic infection.

Eur J Immunol. 2023-3

[4]
Clonal lineage tracing reveals mechanisms skewing CD8+ T cell fate decisions in chronic infection.

J Exp Med. 2023-1-2

[5]
Type I interferons and MAVS signaling are necessary for tissue resident memory CD8+ T cell responses to RSV infection.

PLoS Pathog. 2022-2

[6]
Resident memory CD8 T cells in regional lymph nodes mediate immunity to metastatic melanoma.

Immunity. 2021-9-14

[7]
Single-cell lineage tracing of metastatic cancer reveals selection of hybrid EMT states.

Cancer Cell. 2021-8-9

[8]
TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data.

Nat Methods. 2021-6

[9]
The architectural design of CD8+ T cell responses in acute and chronic infection: Parallel structures with divergent fates.

J Exp Med. 2021-4-5

[10]
Central memory CD8 T cells derive from stem-like Tcf7 effector cells in the absence of cytotoxic differentiation.

Immunity. 2020-11-17

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