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数据标准究竟为我们做了什么?

What Have Data Standards Ever Done for Us?

作者信息

Orchard S E

机构信息

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambs, UK.

出版信息

Mol Cell Proteomics. 2025 Jun;24(6):100933. doi: 10.1016/j.mcpro.2025.100933. Epub 2025 Feb 28.

DOI:10.1016/j.mcpro.2025.100933
PMID:40024375
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12289529/
Abstract

The Human Proteome Organization Proteomics Standards Initiative has been successfully developing guidelines, data formats, and controlled vocabularies for both the field of molecular interaction and that of mass spectrometry for more than 20 years. This review explores some of the ways that the proteomics community has benefitted from the development of community standards and takes a look at some of the tools and resources that have been improved or developed as a result of the work of the Human Proteome Organization-Proteomics Standards Initiative.

摘要

人类蛋白质组组织蛋白质组学标准倡议组织在分子相互作用和质谱分析领域成功制定指南、数据格式和受控词汇已有20多年。本综述探讨了蛋白质组学界从社区标准的制定中受益的一些方式,并审视了一些因人类蛋白质组组织-蛋白质组学标准倡议组织的工作而得到改进或开发的工具和资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471b/12289529/b044c4352bf0/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471b/12289529/4574c05ce46a/ga1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471b/12289529/6e840dd36c30/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471b/12289529/b044c4352bf0/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471b/12289529/4574c05ce46a/ga1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471b/12289529/6e840dd36c30/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/471b/12289529/b044c4352bf0/gr2.jpg

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本文引用的文献

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hu.MAP3.0: atlas of human protein complexes by integration of >25,000 proteomic experiments.hu.MAP3.0:通过整合25000多项蛋白质组学实验构建的人类蛋白质复合物图谱
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人类蛋白质组组织(HUPO)人类蛋白质组计划2024年人类蛋白质组报告。
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Analysis and Visualization of Quantitative Proteomics Data Using FragPipe-Analyst.使用 FragPipe-Analyst 分析和可视化定量蛋白质组学数据。
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Communicating Mass Spectrometry Quality Information in mzQC with Python, R, and Java.使用 Python、R 和 Java 在 mzQC 中传递质谱质量控制信息。
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