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本文引用的文献

1
Recent mechanistic developments for cytochrome c nitrite reductase, the key enzyme in the dissimilatory nitrate reduction to ammonium pathway.近期细胞色素 c 亚硝酸盐还原酶的作用机制的发展,该酶是异化硝酸盐还原为铵途径中的关键酶。
J Inorg Biochem. 2024 Jul;256:112542. doi: 10.1016/j.jinorgbio.2024.112542. Epub 2024 Mar 24.
2
An unusual active site architecture in cytochrome c nitrite reductase NrfA-1 from Geobacter metallireducens.亚铁还原菌细胞色素 c 亚硝酸盐还原酶 NrfA-1 中一种不寻常的活性部位结构。
FEMS Microbiol Lett. 2023 Jan 17;370. doi: 10.1093/femsle/fnad068.
3
The Biologically Relevant Coordination Chemistry of Iron and Nitric Oxide: Electronic Structure and Reactivity.铁与一氧化氮的生物相关配位化学:电子结构与反应活性
Chem Rev. 2021 Dec 22;121(24):14682-14905. doi: 10.1021/acs.chemrev.1c00253. Epub 2021 Dec 13.
4
Elucidating Electron Storage and Distribution within the Pentaheme Scaffold of Cytochrome Nitrite Reductase (NrfA).阐明细胞色素亚硝酸盐还原酶(NrfA)五联体支架内的电子存储和分布。
Biochemistry. 2021 Jun 15;60(23):1853-1867. doi: 10.1021/acs.biochem.0c00977. Epub 2021 Jun 1.
5
Cytochrome nitrite reductase from the bacterium represents a new NrfA subclass.来自细菌的细胞色素亚硝酸盐还原酶代表了一个新的 NrfA 亚类。
J Biol Chem. 2020 Aug 14;295(33):11455-11465. doi: 10.1074/jbc.RA120.013981. Epub 2020 Jun 9.
6
Trapping of a Putative Intermediate in the Cytochrome Nitrite Reductase (ccNiR)-Catalyzed Reduction of Nitrite: Implications for the ccNiR Reaction Mechanism.细胞色素亚硝酸盐还原酶(ccNiR)催化亚硝酸盐还原过程中一种中间产物的捕获:对 ccNiR 反应机制的启示。
J Am Chem Soc. 2019 Aug 28;141(34):13358-13371. doi: 10.1021/jacs.9b03036. Epub 2019 Aug 19.
7
The microbial nitrogen-cycling network.微生物氮循环网络。
Nat Rev Microbiol. 2018 May;16(5):263-276. doi: 10.1038/nrmicro.2018.9. Epub 2018 Feb 5.
8
Design and fine-tuning redox potentials of metalloproteins involved in electron transfer in bioenergetics.生物能量学中参与电子传递的金属蛋白的氧化还原电位的设计与微调。
Biochim Biophys Acta. 2016 May;1857(5):557-581. doi: 10.1016/j.bbabio.2015.08.006. Epub 2015 Aug 21.
9
Resolution of key roles for the distal pocket histidine in cytochrome C nitrite reductases.解析细胞色素 C 亚硝酸盐还原酶远端口袋组氨酸的关键作用。
J Am Chem Soc. 2015 Mar 4;137(8):3059-68. doi: 10.1021/ja512941j. Epub 2015 Feb 18.
10
Storage, transport, release: heme versatility in nitrite reductase electron transfer studied by molecular dynamics simulations.储存、运输、释放:通过分子动力学模拟研究亚硝酸还原酶电子转移中的血红素多功能性
Phys Chem Chem Phys. 2015 Feb 14;17(6):4483-91. doi: 10.1039/c4cp04383a.

单体NrfA对亚硝酸盐的电催化还原:氨化机制的共性

Electrocatalytic Nitrite Reduction by a Monomeric NrfA: Commonality in Ammonification Mechanisms.

作者信息

Tracy Matt, Sosa Alfaro Victor, Campeciño Julius, Hird Krystina, Hegg Eric L, Lehnert Nicolai, Elliott Sean J

机构信息

Department of Chemistry, Boston University, 24 Cummington Mall, Boston, Massachusetts 02215, United States.

Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States.

出版信息

Biochemistry. 2025 Mar 18;64(6):1359-1369. doi: 10.1021/acs.biochem.4c00761. Epub 2025 Mar 3.

DOI:10.1021/acs.biochem.4c00761
PMID:40026019
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11925055/
Abstract

Cytochrome nitrite reductase (NrfA) is a pentaheme enzyme capable of the six-electron reduction of nitrite to ammonia, which is a key step in the nitrogen cycle. All NrfA enzymes appear to have a branched set of two heme-based pathways for electron transfer to a conserved active site, and until recently, NrfA enzymes from a variety of microorganisms were considered to possess a homodimeric structure; yet, recent efforts have shown that in solution, purified () NrfA is a monomer. Direct protein electrochemistry has been used in the past to characterize the dimeric NrfAs from and , revealing features of maximal activity as a function of nitrite concentration, and redox poise, both of which were interpreted in terms of the dimeric structure providing multiple redox equivalents. Here, we examine NrfA using protein film electrochemistry and find that all of the features that were associated with the dimeric enzymes are also found in the monomeric enzyme. Further, we probe the contribution of specific heme environments through investigation of two His to Met heme ligand mutants, each along a different branch of the electron transfer network, which demonstrates that each path is likely essential to support native-like catalysis.

摘要

细胞色素亚硝酸盐还原酶(NrfA)是一种含五个血红素的酶,能够将亚硝酸盐六电子还原为氨,这是氮循环中的关键步骤。所有NrfA酶似乎都有一组基于血红素的分支电子传递途径,通向一个保守的活性位点,直到最近,来自多种微生物的NrfA酶都被认为具有同二聚体结构;然而,最近的研究表明,在溶液中,纯化的()NrfA是单体。过去曾使用直接蛋白质电化学来表征来自和的二聚体NrfA,揭示了最大活性与亚硝酸盐浓度和氧化还原平衡的关系,这两者都根据提供多个氧化还原当量的二聚体结构进行了解释。在这里,我们使用蛋白质膜电化学研究NrfA,发现单体酶中也存在与二聚体酶相关的所有特征。此外,我们通过研究两个组氨酸到甲硫氨酸血红素配体突变体来探究特定血红素环境的贡献,每个突变体沿着电子传递网络的不同分支,这表明每条途径可能对于支持类似天然的催化作用都是必不可少的。