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希瓦氏菌细胞色素 c 亚硝酸盐还原酶的直接电化学:在二聚体界面上相互作用的证据。

Direct electrochemistry of Shewanella oneidensis cytochrome c nitrite reductase: evidence of interactions across the dimeric interface.

机构信息

Department of Chemistry, Boston University, 590 Commonwealth Avenue, Boston, MA 02215, USA.

出版信息

Biochemistry. 2012 Dec 21;51(51):10175-85. doi: 10.1021/bi3011708. Epub 2012 Dec 12.

DOI:10.1021/bi3011708
PMID:23210513
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3566639/
Abstract

Shewanella oneidensis cytochrome c nitrite reductase (soNrfA), a dimeric enzyme that houses five c-type hemes per protomer, conducts the six-electron reduction of nitrite and the two-electron reduction of hydroxylamine. Protein film voltammetry (PFV) has been used to study the cytochrome c nitrite reductase from Escherichia coli (ecNrfA) previously, revealing catalytic reduction of both nitrite and hydroxylamine substrates by ecNrfA adsorbed to a graphite electrode that is characterized by "boosts" and attenuations in activity depending on the applied potential. Here, we use PFV to investigate the catalytic properties of soNrfA during both nitrite and hydroxylamine turnover and compare those properties to the properties of ecNrfA. Distinct differences in both the electrochemical and kinetic characteristics of soNrfA are observed; e.g., all detected electron transfer steps are one-electron in nature, contrary to what has been observed in ecNrfA [Angove, H. C., Cole, J. A., Richardson, D. J., and Butt, J. N. (2002) J. Biol. Chem. 277, 23374-23381]. Additionally, we find evidence of substrate inhibition during nitrite turnover and negative cooperativity during hydroxylamine turnover, neither of which has previously been observed in any cytochrome c nitrite reductase. Collectively, these data provide evidence that during catalysis, potential pathways of communication exist between the individual soNrfA monomers comprising the native homodimer.

摘要

希瓦氏菌细胞色素 c 亚硝酸盐还原酶(soNrfA)是一种二聚体酶,每个亚基含有五个 c 型血红素,能够进行亚硝酸盐的六电子还原和羟胺的两电子还原。先前已经使用蛋白膜伏安法(PFV)研究了大肠杆菌(ecNrfA)的细胞色素 c 亚硝酸盐还原酶,揭示了 ecNrfA 吸附到石墨电极上对亚硝酸盐和羟胺底物的催化还原,其特征是根据施加的电势,活性会出现“增强”和“衰减”。在这里,我们使用 PFV 研究了 soNrfA 在亚硝酸盐和羟胺周转过程中的催化特性,并将这些特性与 ecNrfA 的特性进行了比较。观察到 soNrfA 在电化学和动力学特性上都存在明显差异;例如,所有检测到的电子转移步骤都是单电子性质的,与在 ecNrfA 中观察到的情况相反[Angove,H.C.,Cole,J.A.,Richardson,D.J.,和 Butt,J.N.(2002)J. Biol. Chem. 277,23374-23381]。此外,我们发现亚硝酸盐周转过程中存在底物抑制,羟胺周转过程中存在负协同作用,这在以前的任何细胞色素 c 亚硝酸盐还原酶中都没有观察到。总的来说,这些数据表明,在催化过程中,组成天然同源二聚体的单个 soNrfA 单体之间存在潜在的通讯途径。

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本文引用的文献

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Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis.检测微生物生长动态中的转录触发因素:在呼吸多功能细菌希瓦氏菌中的应用。
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Laue crystal structure of Shewanella oneidensis cytochrome c nitrite reductase from a high-yield expression system.希瓦氏菌细胞色素 c 亚硝酸盐还原酶的劳埃晶体结构来自高产表达系统。
J Biol Inorg Chem. 2012 Apr;17(4):647-62. doi: 10.1007/s00775-012-0885-0. Epub 2012 Mar 2.
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Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA.嗜温栖热放线菌中硝酸盐的还原依赖于非典型的硝酸盐同化蛋白(NAP)和亚硝酸盐还原酶(NRF)系统,其中NapB作为从CymA到NapA的首选电子传递蛋白。
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Direct electrochemistry of redox enzymes as a tool for mechanistic studies.氧化还原酶的直接电化学作为一种机理研究工具
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Towards environmental systems biology of Shewanella.迈向希瓦氏菌的环境系统生物学
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