Britton Jessica C, Somogyi-Leatigaga Anett, Watson Billy A, Haro Endika, Mulder Cassidy G, Kennedy Kari D, Cooper Allen M, Whitley Kristen L, Yeboah Ruth-Love, Kim Jeanyoung, Yu Micah C, Campos Jairo D, Amoah Japhet, Kawauchi Shimako, Kim Eunyoung, Pira Charmaine U, Oberg Kerby C
Department of Pathology and Human Anatomy, Loma Linda University, Loma Linda, CA, United States.
School of Medicine, Loma Linda University, Loma Linda, CA, United States.
Front Cell Dev Biol. 2025 Feb 20;13:1552716. doi: 10.3389/fcell.2025.1552716. eCollection 2025.
In vertebrate limb morphogenesis, wingless-related integration site (Wnt) proteins and fibroblast growth factors (Fgfs) secreted from the apical ectodermal ridge (AER) coordinate proximodistal outgrowth. Fgfs also sustain sonic hedgehog (Shh) in the zone of polarizing activity (ZPA). Shh directs anteroposterior patterning and expansion and regulates AER-, establishing a positive regulatory feedback loop that is vital in sustaining limb outgrowth. The transcription factor LIM homeodomain 2 (Lhx2) is expressed in the distal mesoderm and coordinates AER and ZPA signals that control cellular proliferation, differentiation, and shaping of the developing limb. Yet how Lhx2 is transcriptionally regulated to support such functions has only been partially characterized.
METHODS/RESULTS: We have identified two limb-specific -regulatory modules (CRMs) active within the expression domain in the limb. Chromatin conformation analysis of the locus in mouse embryonic limb bud cells predicted CRMs- promoter interactions. Single-cell RNA-sequencing analysis of limb bud cells revealed co-expression of several Fgf-related and Wnt-related transcripts in -expressing cells. Additionally, disruption of Ets and Tcf/Lef binding sites resulted in loss of reporter-driven CRM activity. Finally, binding of β-catenin to both -associated CRMs supports the associated binding of Tcf/Lef transcription factors.
These results suggest a role for Ets and Tcf/Lef transcription factors in the regulation of expression through these limb-specific -associated CRMs. Moreover, these CRMs provide a mechanism for Fgf and Wnt signaling to localize and maintain distal expression during vertebrate limb development.
在脊椎动物肢体形态发生过程中,从顶端外胚层嵴(AER)分泌的无翅相关整合位点(Wnt)蛋白和成纤维细胞生长因子(Fgf)协调近端到远端的生长。Fgf还在极化活性区(ZPA)维持音猬因子(Shh)。Shh指导前后模式形成和扩展,并调节AER,建立一个在维持肢体生长中至关重要的正调控反馈回路。转录因子LIM同源结构域2(Lhx2)在远端中胚层表达,并协调AER和ZPA信号,这些信号控制发育中肢体的细胞增殖、分化和塑形。然而,Lhx2如何被转录调控以支持这些功能仅得到部分表征。
方法/结果:我们在肢体中鉴定出两个在表达域内活跃的肢体特异性调控模块(CRM)。对小鼠胚胎肢体芽细胞中位点的染色质构象分析预测了CRM与启动子的相互作用。对肢体芽细胞的单细胞RNA测序分析揭示了在表达细胞中几种Fgf相关转录本和Wnt相关转录本的共表达。此外,Ets和Tcf/Lef结合位点的破坏导致报告基因驱动的CRM活性丧失。最后,β-连环蛋白与两个相关CRM的结合支持Tcf/Lef转录因子的相关结合。
这些结果表明Ets和Tcf/Lef转录因子在通过这些肢体特异性相关CRM调控表达中发挥作用。此外,这些CRM为Fgf和Wnt信号在脊椎动物肢体发育过程中定位和维持远端表达提供了一种机制。