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网络特性限制了……中基因表达的自然选择。 (原文“in”后面似乎缺少具体内容)

Network properties constrain natural selection on gene expression in .

作者信息

Inskeep Tyler R, Groen Simon C

机构信息

Department of Botany and Plant Sciences, University of California, Riverside.

Institute for Integrative Genome Biology, University of California, Riverside.

出版信息

bioRxiv. 2025 Feb 24:2025.02.19.639144. doi: 10.1101/2025.02.19.639144.

Abstract

Gene regulatory networks (GRNs) integrate genetic and environmental signals to coordinate complex phenotypes and evolve through a balance of selection and drift. Using publicly available datasets from , we investigated the extent of natural selection on transcript abundance by linking population-scale variation in gene expression to fecundity, a key fitness component. While the expression of most genes covaried only weakly with fitness, which is typical for polygenic traits, we identified seven transcripts under significant directional selection. These included and implicating variation in nutrient-sensing and metabolic pathways as impacting fitness. Stronger directional selection on tissue-specific and older genes highlighted the germline and nervous system as focal points of adaptive change. Network position further constrained selection on gene expression; high-connectivity genes faced stronger stabilizing and directional selection, highlighting GRN architecture as a key factor in microevolutionary dynamics. The activity of transcription factors such as , which regulates mitochondrial stress responses, emerged as targets of selection, revealing potential links between energy homeostasis and fitness. Our findings demonstrate how GRNs mediate the interplay between selection and drift, shaping microevolutionary trajectories of gene expression and phenotypic diversity.

摘要

基因调控网络(GRNs)整合遗传和环境信号,以协调复杂的表型,并通过选择和漂变的平衡而进化。利用公开可用的数据集,我们通过将基因表达的群体规模变异与繁殖力(一个关键的适合度组成部分)联系起来,研究了转录本丰度上自然选择的程度。虽然大多数基因的表达与适合度的协变仅很微弱,这是多基因性状的典型情况,但我们鉴定出了7个处于显著定向选择下的转录本。其中包括 和 ,这表明营养感知和代谢途径中的变异会影响适合度。对组织特异性基因和较老基因更强的定向选择突出了生殖系和神经系统作为适应性变化的焦点。网络位置进一步限制了对基因表达的选择;高连接性基因面临更强的稳定选择和定向选择,突出了基因调控网络结构作为微进化动态中的一个关键因素。诸如 等调节线粒体应激反应的转录因子的活性成为选择目标,揭示了能量稳态与适合度之间的潜在联系。我们的研究结果证明了基因调控网络如何介导选择和漂变之间的相互作用,塑造基因表达的微进化轨迹和表型多样性。

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