Vazquez-Boland José A, Val-Calvo Jorge, Duquesne Fabien, Decorosi Francesca, Viti Carlo, Petry Sandrine, Scortti Mariela
Microbial Pathogenomics Laboratory, Edinburgh Medical School (Biomedical Sciences), University of Edinburgh, Edinburgh, UK.
ANSES, Laboratory for Animal Health, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France.
Int J Syst Evol Microbiol. 2025 Mar;75(3). doi: 10.1099/ijsem.0.006679.
We present the description of the new species, , found during phylogenomic investigations of a global collection of strains identified as () . Strain PAM 2766 was isolated from horse-breeding farm soil in Normandy, France, and was indistinguishable from based on the usual identification tests. Whole-genome phylogenetic analyses located PAM 2766 in the same sublineage as , together with , , , , and . PAM 2766 is most closely related to, but sufficiently distinct from, DSM 20307 to be considered a separate species. The average nt identity (ANI) and average aa identity (AAI) values are 88.60% and 92.35, respectively, well below the species cutoff. The PAM 2766 draft genome is ~5.3 Mb in size with 68.98% G+C mol content. PAM 2766 is strictly aerobic and non-motile and produces smooth, creamy to buff-coloured colonies very similar to those of . It phenotypically differs from the latter by the ability to grow at 5 °C, a strongly positive urease test at 24 h and specificities in the carbon and nitrogen source utilization profile as determined by phenotype microarray screens. Our data indicate that PAM 2766 belongs to a novel species, for which the name sp. nov. is proposed. was avirulent in macrophage infection assays and is assumed to be non-pathogenic. The type strain is PAM 2766 (=CETC 30995=NCTC 14987).
我们描述了一个新物种,该物种是在对全球范围内鉴定为()的菌株进行系统基因组研究时发现的。菌株PAM 2766是从法国诺曼底的一个养马场土壤中分离出来的,根据常规鉴定测试,它与无法区分。全基因组系统发育分析将PAM 2766定位在与相同的亚谱系中,与、、、、和在一起。PAM 2766与DSM 20307关系最为密切,但又有足够的差异,可被视为一个单独的物种。平均核苷酸同一性(ANI)和平均氨基酸同一性(AAI)值分别为88.60%和92.35,远低于物种界限。PAM 2766的草图基因组大小约为5.3 Mb,G+C摩尔含量为68.98%。PAM 2766严格需氧且不运动,产生的菌落光滑,呈奶油色至浅黄色,与的菌落非常相似。它在表型上与后者的不同之处在于能够在5°C下生长、在24小时时脲酶试验呈强阳性以及通过表型微阵列筛选确定的碳源和氮源利用谱的特异性。我们的数据表明PAM 2766属于一个新物种,为此提出了新物种名sp. nov.。在巨噬细胞感染试验中无毒,被认为是非致病性的。模式菌株是PAM 2766(=CETC 30995=NCTC 14987)。