Goldman Doran A, Xue Katherine S, Parrott Autumn B, Lopez Jamie A, Vila Jean C C, Jeeda Rashi R, Franzese Lauryn R, Porter Rachel L, Gray Ira J, DeFelice Brian C, Petrov Dmitri A, Good Benjamin H, Relman David A, Huang Kerwyn Casey
Department of Biology, Stanford University, Stanford, CA 94305.
Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305.
Proc Natl Acad Sci U S A. 2025 Mar 18;122(11):e2322440122. doi: 10.1073/pnas.2322440122. Epub 2025 Mar 10.
The long-term success of introduced populations depends on both their initial size and ability to compete against existing residents, but it remains unclear how these factors collectively shape colonization dynamics. Here, we investigate how initial population (propagule) size shapes the outcome of community coalescence by systematically mixing eight pairs of in vitro microbial communities at ratios that vary over six orders of magnitude, and we compare our results to neutral ecological theory. Although the composition of the resulting cocultures deviated substantially from neutral expectations, each coculture contained species whose relative abundance depended on propagule size even after ~40 generations of growth. Using a consumer-resource model, we show that this dose-dependent colonization can arise when resident and introduced species have high niche overlap and consume shared resources at similar rates. Strain isolates displayed longer-lasting dose dependence when introduced into diverse communities than in pairwise cocultures, consistent with our model's prediction that propagule size should have larger, more persistent effects in diverse communities. Our model also successfully predicted that species with similar resource-utilization profiles, as inferred from growth in spent media and untargeted metabolomics, would show stronger dose dependence in pairwise coculture. This work demonstrates that transient, dose-dependent colonization dynamics can emerge from resource competition and exert long-term effects on the outcomes of community coalescence.
引入种群的长期成功取决于其初始规模以及与现有居民竞争的能力,但尚不清楚这些因素如何共同塑造定殖动态。在这里,我们通过以六个数量级变化的比例系统地混合八对体外微生物群落,研究初始种群(繁殖体)大小如何塑造群落合并的结果,并将我们的结果与中性生态理论进行比较。尽管所得共培养物的组成与中性预期有很大偏差,但即使在生长约40代后,每个共培养物中仍包含相对丰度取决于繁殖体大小的物种。使用消费者-资源模型,我们表明,当本地物种和引入物种具有高生态位重叠并以相似速率消耗共享资源时,这种剂量依赖性定殖就会出现。与成对共培养相比,当菌株分离物引入多样化群落时,显示出更持久的剂量依赖性,这与我们的模型预测一致,即繁殖体大小在多样化群落中应具有更大、更持久的影响。我们的模型还成功预测,从消耗培养基中的生长和非靶向代谢组学推断,具有相似资源利用概况的物种在成对共培养中会表现出更强的剂量依赖性。这项工作表明,短暂的、剂量依赖性的定殖动态可以从资源竞争中出现,并对群落合并的结果产生长期影响。