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Genome-wide profiling of tRNA modifications by Induro-tRNAseq reveals coordinated changes.通过Induro-tRNAseq对tRNA修饰进行全基因组分析揭示了协同变化。
Nat Commun. 2025 Jan 26;16(1):1047. doi: 10.1038/s41467-025-56348-1.
2
Protocol to identify amino acids bound to tRNA by aminoacylation using mass spectrometry.通过氨酰化作用使用质谱鉴定与 tRNA 结合的氨基酸的方案。
STAR Protoc. 2023 Sep 15;4(3):102504. doi: 10.1016/j.xpro.2023.102504. Epub 2023 Aug 15.
3
tRNA Dysregulation in Neurodevelopmental and Neurodegenerative Diseases.神经发育和神经退行性疾病中的转运RNA失调
Annu Rev Cell Dev Biol. 2023 Oct 16;39:223-252. doi: 10.1146/annurev-cellbio-021623-124009. Epub 2023 Jun 20.
4
Ribosomal Synthesis of Peptides Bearing Noncanonical Backbone Structures via Chemical Posttranslational Modifications.通过化学翻译后修饰进行非经典主链结构肽的核糖体合成。
Methods Mol Biol. 2023;2670:255-266. doi: 10.1007/978-1-0716-3214-7_13.
5
Aminoacyl tRNA Synthetases: Implications of Structural Biology in Drug Development against Trypanosomatid Parasites.氨酰tRNA合成酶:结构生物学在抗锥虫寄生虫药物开发中的意义。
ACS Omega. 2023 Apr 10;8(17):14884-14899. doi: 10.1021/acsomega.3c00826. eCollection 2023 May 2.
6
Structural basis of tRNAPro acceptor stem recognition by a bacterial trans-editing domain.原核生物转译编辑结构域识别 tRNAPro 受体茎干的结构基础。
Nucleic Acids Res. 2023 May 8;51(8):3988-3999. doi: 10.1093/nar/gkad192.
7
Exploration of aminoacyl-tRNA synthetases from eukaryotic parasites for drug development.探索真核寄生虫中的氨酰-tRNA 合成酶以开发药物。
J Biol Chem. 2023 Mar;299(3):102860. doi: 10.1016/j.jbc.2022.102860. Epub 2022 Dec 31.
8
Single-read tRNA-seq analysis reveals coordination of tRNA modification and aminoacylation and fragmentation.单读 tRNA-seq 分析揭示了 tRNA 修饰和氨酰化以及片段化的协调作用。
Nucleic Acids Res. 2023 Feb 22;51(3):e17. doi: 10.1093/nar/gkac1185.
9
Aminoacyl-tRNA synthetases in human health and disease.人类健康与疾病中的氨酰-tRNA合成酶
Front Physiol. 2022 Oct 18;13:1029218. doi: 10.3389/fphys.2022.1029218. eCollection 2022.
10
Chemical insights into flexizyme-mediated tRNA acylation.柔性酶介导的 tRNA 酰化的化学研究进展。
Cell Chem Biol. 2022 Jul 21;29(7):1071-1112. doi: 10.1016/j.chembiol.2022.03.012. Epub 2022 Apr 11.

用于在细胞中检测氨酰化和氨酰-tRNA编辑的策略。

Strategies for detecting aminoacylation and aminoacyl-tRNA editing and in cells.

作者信息

Watkins Rylan R, Kavoor Arundhati, Musier-Forsyth Karin

机构信息

Department of Chemistry and Biochemistry and Center for RNA Biology, Ohio State University, Columbus, OH, USA.

出版信息

Isr J Chem. 2024 Sep;64(8-9). doi: 10.1002/ijch.202400009. Epub 2024 May 6.

DOI:10.1002/ijch.202400009
PMID:40066018
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11892019/
Abstract

Aminoacyl-tRNA synthetases (aaRSs) maintain translational fidelity by ensuring the formation of correct aminoacyl-tRNA pairs. Numerous point mutations in human aaRSs have been linked to disease phenotypes. Structural studies of aaRSs from human pathogens encoding unique domains support these enzymes as potential candidates for therapeutics. Studies have shown that the identity of tRNA pools in cells changes between different cell types and under stress conditions. While traditional radioactive aminoacylation analyses can determine the effect of disease-causing mutations on aaRS function, these assays are not amenable to drug discovery campaigns and do not take into account the variability of the intracellular tRNA pools. Here, we review modern techniques to characterize aaRS activity and in cells. The cell-based approaches analyse the aminoacyl-tRNA pool to observe trends in aaRS activity and fidelity. Taken together, these approaches allow high-throughput drug screening of aaRS inhibitors and systems-level analyses of the dynamic tRNA population under a variety of conditions and disease states.

摘要

氨酰-tRNA合成酶(aaRSs)通过确保正确的氨酰-tRNA对的形成来维持翻译保真度。人类aaRSs中的许多点突变已与疾病表型相关联。对来自编码独特结构域的人类病原体的aaRSs的结构研究支持这些酶作为治疗的潜在候选物。研究表明,细胞中tRNA库的特性在不同细胞类型之间以及在应激条件下会发生变化。虽然传统的放射性氨酰化分析可以确定致病突变对aaRS功能的影响,但这些检测方法不适合用于药物发现研究,并且没有考虑细胞内tRNA库的变异性。在这里,我们综述了表征aaRS活性及其在细胞中的现代技术。基于细胞的方法分析氨酰-tRNA库以观察aaRS活性和保真度的趋势。综上所述,这些方法允许对aaRS抑制剂进行高通量药物筛选,并在各种条件和疾病状态下对动态tRNA群体进行系统水平分析。