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非NRPS型铁载体合成酶的发现、功能表征及结构研究。

Discovery, functional characterization, and structural studies of the NRPS-independent siderophore synthetases.

作者信息

Patel Ketan D, Fisk Mercedes B, Gulick Andrew M

机构信息

Department of Structural Biology, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.

出版信息

Crit Rev Biochem Mol Biol. 2024 Dec;59(6):447-471. doi: 10.1080/10409238.2025.2476476. Epub 2025 Mar 14.

DOI:10.1080/10409238.2025.2476476
PMID:40085133
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12033978/
Abstract

To adapt to low-iron environments, many bacteria produce siderophores, low molecular weight iron chelators that are secreted into the environment where they bind ferric iron. The production of siderophore uptake systems then allows retrieval of the iron-complexed siderophore into the cell, where the metal ion can be used for structural and catalytic roles in many proteins. While many siderophores are produced by the activity of a family of large modular nonribosomal peptide synthetase (NRPS) enzymes, a second class of siderophores are produced by an alternate pathway. These so-called NRPS-independent siderophores (NIS) are biosynthesized through a shared catalytic step that is performed by an NIS synthetase. These enzymes catalyze the formation of an amide linkage between a carboxylate and an amine or, more rarely, form an ester with a hydroxyl substrate. Here we describe the discovery and biochemical studies of diverse NIS synthetases from different siderophore pathways to provide insight into their substrate specificity and catalytic mechanism. The structures of a small number of family members are additionally described that correlates the functional work with the enzyme structure. While the field has come a long way since it was described as a "long-overlooked" family in 2009, there remains much to discover in this large and important enzyme family.

摘要

为了适应低铁环境,许多细菌会产生铁载体,即分泌到环境中的低分子量铁螯合剂,它们能结合三价铁。铁载体摄取系统的产生使得与铁结合的铁载体能够被转运到细胞内,在细胞中金属离子可用于许多蛋白质的结构和催化作用。虽然许多铁载体是由一类大型模块化非核糖体肽合成酶(NRPS)的活性产生的,但第二类铁载体是通过另一条途径产生的。这些所谓的非NRPS依赖性铁载体(NIS)是通过由NIS合成酶执行的共同催化步骤进行生物合成的。这些酶催化羧酸盐与胺之间形成酰胺键,或者更罕见的是,与羟基底物形成酯。在这里,我们描述了来自不同铁载体途径的多种NIS合成酶的发现和生化研究,以深入了解它们的底物特异性和催化机制。此外,还描述了少数家族成员的结构,将功能研究与酶结构联系起来。尽管自2009年该家族被描述为“长期被忽视”以来,该领域已经取得了很大进展,但在这个庞大而重要的酶家族中仍有许多有待发现的地方。

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Nucleic Acids Res. 2025 Jan 6;53(D1):D444-D456. doi: 10.1093/nar/gkae1082.
3
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Methods Enzymol. 2024;702:75-87. doi: 10.1016/bs.mie.2024.06.017. Epub 2024 Jul 20.
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