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对Roc双组分调控系统的功能和泛基因组探索确定了假单胞菌属物种中的新成员。

Functional and Pangenomic Exploration of Roc Two-Component Regulatory Systems Identifies Novel Players Across Pseudomonas Species.

作者信息

Simon Victor, Trouillon Julian, Attrée Ina, Elsen Sylvie

机构信息

Institute of Structural Biology, UMR5075, Team Bacterial Pathogenesis and Cellular Responses, University Grenoble Alpes, Grenoble, France.

Institute of Molecular Systems Biology, ETH Zürich, Zürich, Switzerland.

出版信息

Mol Microbiol. 2025 May;123(5):439-453. doi: 10.1111/mmi.15357. Epub 2025 Mar 14.

Abstract

The opportunistic pathogen Pseudomonas aeruginosa relies on a large collection of two-component regulatory systems (TCSs) to sense and adapt to changing environments. Among them, the Roc (regulation of cup) system is a one-of-a-kind network of branched TCSs, composed of two histidine kinases (HKs-RocS1 and RocS2) interacting with three response regulators (RRs-RocA1, RocR, and RocA2), which regulate virulence, antibiotic resistance, and biofilm formation. Based on extensive work on the Roc system, previous data suggested the existence of other key regulators yet to be discovered. In this work, we identified PA4080, renamed RocA3, as a fourth RR that is activated by RocS1 and RocS2 and that positively controls the expression of the cupB operon. Comparative genomic analysis of the locus identified a gene-rocR3-adjacent to rocA3 in a subpopulation of strains that encodes a protein with structural and functional similarity to the c-di-GMP phosphodiesterase RocR. Furthermore, we identified a fourth branch of the Roc system consisting of the PA2583 HK, renamed RocS4, and the Hpt protein HptA. Using a bacterial two-hybrid system, we showed that RocS4 interacts with HptA, which in turn interacts with RocA1, RocA2, and RocR3. Finally, we mapped the pangenomic RRs repertoire, establishing a comprehensive view of the plasticity of such regulators among clades of the species. Overall, our work provides a comprehensive inter-species definition of the Roc system, nearly doubling the number of proteins known to be involved in this interconnected network of TCSs controlling pathogenicity in Pseudomonas species.

摘要

机会致病菌铜绿假单胞菌依靠大量的双组分调节系统(TCSs)来感知并适应不断变化的环境。其中,Roc(cup调节)系统是一种独特的分支TCSs网络,由两个组氨酸激酶(HKs - RocS1和RocS2)与三个响应调节因子(RRs - RocA1、RocR和RocA2)相互作用组成,这些调节因子调控毒力、抗生素抗性和生物膜形成。基于对Roc系统的大量研究工作,先前的数据表明还存在其他尚未发现的关键调节因子。在这项研究中,我们鉴定出PA4080,重新命名为RocA3,它是由RocS1和RocS2激活的第四个RR,并且正向调控cupB操纵子的表达。对该位点的比较基因组分析在一个菌株亚群中鉴定出一个与rocA3相邻的基因rocR3,其编码一种与环二鸟苷酸磷酸二酯酶RocR具有结构和功能相似性的蛋白质。此外,我们鉴定出Roc系统的第四个分支,由重新命名为RocS4的PA2583 HK和Hpt蛋白HptA组成。使用细菌双杂交系统,我们表明RocS4与HptA相互作用,而HptA又与RocA1、RocA2和RocR3相互作用。最后,我们绘制了泛基因组RRs图谱,全面了解了这些调节因子在该物种进化枝中的可塑性。总体而言,我们的工作提供了Roc系统的全面种间定义,使已知参与这个控制假单胞菌致病性的TCSs相互连接网络的蛋白质数量几乎增加了一倍。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ac2/12051241/395cb0922a92/MMI-123-439-g002.jpg

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