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通过生物信息学分析鉴定中度至重度哮喘与早期肺腺癌之间的枢纽基因。

Identification of hub genes between moderate to severe asthma and early lung adenocarcinoma through bioinformatics analysis.

作者信息

Xue Jiaqian, Zhou Qingwei

机构信息

Respiratory Department, The First Affiliated Hospital of Henan University of Chinese Medicine, No. 19 Renmin Road, Zhengzhou, 450000, Henan, China.

出版信息

Sci Rep. 2025 Mar 18;15(1):9243. doi: 10.1038/s41598-025-94270-0.

Abstract

The objective of this study was to explore the genetic link between moderate to severe asthma and early-stage lung adenocarcinoma (LUAD) using bioinformatic methods. The Cancer Genome Atlas gene-expression profiles for early-stage LUAD and GSE76225 data set for moderate to severe asthma were selected for weighted gene co-expression network analysis, and intersected with the relevant module genes and selected hub genes; the relevant network of hub genes was then determined through a protein-protein interaction network. In addition, gene-set enrichment analysis and gene-set variation analysis (GSVA) were conducted on differentially expressed genes between normal and tumor groups. Gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway-enrichment analyses were applied to detect hub gene-related biological functions. Receiver operating characteristic (ROC) curves were employed to confirm the diagnostic value of hub genes. We identified four key genes, of which SFTPC exhibited relatively high value for areas under the ROC curves, indicating high diagnostic value for moderate to severe asthma. The clinical efficacy of SFTPC was thus consistent with GSVA results, indicating that moderate to severe asthma can inhibit the occurrence of early LUAD.

摘要

本研究的目的是利用生物信息学方法探索中度至重度哮喘与早期肺腺癌(LUAD)之间的遗传联系。选择早期LUAD的癌症基因组图谱基因表达谱和中度至重度哮喘的GSE76225数据集进行加权基因共表达网络分析,并与相关模块基因和选定的枢纽基因进行交叉分析;然后通过蛋白质-蛋白质相互作用网络确定枢纽基因的相关网络。此外,对正常组和肿瘤组之间的差异表达基因进行基因集富集分析和基因集变异分析(GSVA)。应用基因本体论和京都基因与基因组百科全书通路富集分析来检测枢纽基因相关的生物学功能。采用受试者工作特征(ROC)曲线来确认枢纽基因的诊断价值。我们鉴定出四个关键基因,其中SFTPC在ROC曲线下面积方面表现出相对较高的值,表明对中度至重度哮喘具有较高的诊断价值。因此,SFTPC的临床疗效与GSVA结果一致,表明中度至重度哮喘可抑制早期LUAD的发生。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f45/11920247/583cc10029ca/41598_2025_94270_Fig1_HTML.jpg

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