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衰老相关基因的综合分析确定了胶质瘤中具有不同特征的预后聚类。

Comprehensive analysis of senescence-related genes identifies prognostic clusters with distinct characteristics in glioma.

作者信息

Wei Wenyuan, Dang Ying, Chen Gang, Han Chao, Zhang Siwei, Zhu Ziqiang, Bie Xiaohua, Xue Jungang

机构信息

Department of Neurosurgery, Honghui Hospital, Xi'an Jiaotong University, Xi'an, 710054, Shaanxi, China.

Department of Neurosurgery, The Second Hospital of Lanzhou University, Lanzhou, 730030, China.

出版信息

Sci Rep. 2025 Mar 19;15(1):9540. doi: 10.1038/s41598-025-93482-8.

Abstract

Cellular senescence, defined as a state of permanent arrest in cell growth, is regarded as a crucial tumor suppression mechanism. However, accumulating scientific evidence suggests that senescent cells play a detrimental role in the progression of cancer. Unfortunately, the current lack of reliable markers that specifically reflect the level of senescence in cancer greatly hinders our in-depth understanding of this important biological foundation. Therefore, the search for more specific and reliable markers to reveal the specific role of senescent cells in cancer progression is particularly urgent and important. To uncover the role of senescence in gliomas, we collected senescence-related genes for integrated analysis. Consensus clustering was used to subtype gliomas based on the senescence gene set, and we identified two robust prognostic clusters of gliomas with distinct survival outcomes, multi-omics landscapes, immune characteristics, and differential drug responses. Multiple external datasets were used to validate the stability of our subtypes. Various computational and experimental methods, including WGCNA (Weighted Gene Co-expression Network Analysis), ssGSEA (single-sample Gene Set Enrichment Analysis), and machine learning algorithms (lasso regression, support vector machines, random forests), were employed for analysis. We found that CEBPB and LMNA are associated with poor prognosis in gliomas and may mediate immunosuppression and tumor proliferation. Drug prediction indicated that dasatinib is a potential therapeutic agent. Our findings provide insights into the role of the senescence gene set in patient stratification and precision medicine.

摘要

细胞衰老被定义为细胞生长的永久性停滞状态,被视为一种关键的肿瘤抑制机制。然而,越来越多的科学证据表明,衰老细胞在癌症进展中发挥着有害作用。不幸的是,目前缺乏能够特异性反映癌症中衰老水平的可靠标志物,这极大地阻碍了我们对这一重要生物学基础的深入理解。因此,寻找更特异、可靠的标志物以揭示衰老细胞在癌症进展中的具体作用尤为迫切和重要。为了揭示衰老在胶质瘤中的作用,我们收集了衰老相关基因进行综合分析。基于衰老基因集,采用一致性聚类对胶质瘤进行亚型分类,我们确定了两个具有不同生存结果、多组学特征、免疫特性和不同药物反应的稳健的胶质瘤预后聚类。使用多个外部数据集验证我们亚型的稳定性。采用了各种计算和实验方法,包括WGCNA(加权基因共表达网络分析)、ssGSEA(单样本基因集富集分析)和机器学习算法(套索回归、支持向量机、随机森林)进行分析。我们发现CEBPB和LMNA与胶质瘤的不良预后相关,可能介导免疫抑制和肿瘤增殖。药物预测表明达沙替尼是一种潜在的治疗药物。我们的研究结果为衰老基因集在患者分层和精准医学中的作用提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1005/11923138/2fa79134d568/41598_2025_93482_Fig1_HTML.jpg

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