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G20中pH依赖的基因型和表型变异性

pH-dependent genotypic and phenotypic variability in G20.

作者信息

Saxena Priya, Samanta Dipayan, Thakur Payal, Goh Kian Mau, Subramaniam Mahadevan, Peyton Brent M, Fields Matthew, Sani Rajesh K

机构信息

Department of Chemical and Biological Engineering, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA.

Data-Driven Material Discovery Center for Bioengineering Innovation, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA.

出版信息

Appl Environ Microbiol. 2025 Apr 23;91(4):e0256524. doi: 10.1128/aem.02565-24. Epub 2025 Mar 26.

Abstract

UNLABELLED

Sulfate-reducing bacteria (SRB) exhibit versatile metabolic adaptability with significant flexibility influenced by pH fluctuations, which play a critical role in biogeochemical cycles. In this study, we used a model SRB, G20, to determine the temporal effects of pH variations (pH 6, 7, and 8) on both growth dynamics and metabolic gene expressions. The specific growth rate at pH 6 (0.014 h) closely matched that at pH 7 (0.016 h), while pH 8 exhibited a lower growth rate (0.010 h). Lactate consumption peaked at pH 7 (0.35 mM lactate.h) and declined at pH 8 (0.09 mM lactate.h). Significant hydrogen production was evident under both acidic and alkaline conditions. Gene expression studies revealed that ATPases function as proton pumps, while hydrogenases mediate reversible proton-to-hydrogen conversion. Sulfate and energy metabolism act as electron acceptors and donors, while amino acid synthesis regulates basic and acidic amino acids to mitigate pH stress. Downregulation of at pH 6 suggests impaired division, correlating with slightly longer lengths (2 µm), while upregulation of divisome proteins at pH 8 suggests efficient division processes, aligning with shorter lengths (1.8 µm). This study will facilitate the employment of G20 in extreme pH environments, enhancing its effectiveness in optimizing bioremediation and anaerobic digestion processes.

IMPORTANCE

Sulfate-reducing bacteria (SRB) play essential roles in global sulfur and carbon cycling and are critical for bioremediation and anaerobic digestion processes. However, detailed studies on the genotypic and phenotypic responses of SRB under varying pH conditions are limited. This study addresses this gap by examining the pH-dependent genetic and metabolic adaptations of G20, revealing key mechanisms regulating hydrogenase and ATPase activities, cell division, and extracellular polymeric substance formation. These findings provide new insights into how SRB maintains pH homeostasis, showcasing their ability to survive and function in both acidic and alkaline environments. Furthermore, this study reveals critical genetic and phenotypic characteristics that will directly aid to engineer industrial effluent management systems, bioremediation, and dissolved heavy metal recovery. By elucidating the dynamic response of G20 to varied pH environments, the research provides a foundation for enhancing the resilience and performance of SRB-based systems, paving the way for improved environmental and industrial applications.

摘要

未标记

硫酸盐还原菌(SRB)表现出多样的代谢适应性,受pH波动影响具有显著的灵活性,pH波动在生物地球化学循环中起关键作用。在本研究中,我们使用模式SRB菌株G20来确定pH变化(pH 6、7和8)对生长动态和代谢基因表达的时间效应。pH 6时的比生长速率(0.014 h⁻¹)与pH 7时(0.016 h⁻¹)相近,而pH 8时生长速率较低(0.010 h⁻¹)。乳酸消耗在pH 7时达到峰值(0.35 mM乳酸·h⁻¹),在pH 8时下降(0.09 mM乳酸·h⁻¹)。在酸性和碱性条件下均有明显的产氢现象。基因表达研究表明,ATP酶作为质子泵发挥作用。而氢化酶介导质子到氢的可逆转化。硫酸盐和能量代谢作为电子受体和供体,氨基酸合成调节碱性和酸性氨基酸以减轻pH胁迫。在pH 6时相关基因的下调表明细胞分裂受损,这与细胞长度略长(约2 µm)相关,而在pH 8时分裂体蛋白的上调表明有效的分裂过程这与较短的细胞长度(约1.8 µm)一致。本研究将促进G20在极端pH环境中的应用,提高其在优化生物修复和厌氧消化过程中的有效性。

重要性

硫酸盐还原菌(SRB)在全球硫和碳循环中起重要作用,对生物修复和厌氧消化过程至关重要。然而,关于SRB在不同pH条件下的基因型和表型反应的详细研究有限。本研究通过研究G20的pH依赖性遗传和代谢适应性来填补这一空白,揭示调节氢化酶和ATP酶活性、细胞分裂和细胞外聚合物形成的关键机制。这些发现为SRB如何维持pH稳态提供了新见解,展示了它们在酸性和碱性环境中生存和发挥功能的能力。此外,本研究揭示了关键的遗传和表型特征,将直接有助于设计工业废水管理系统、生物修复和溶解重金属回收。通过阐明G20对不同pH环境的动态反应,该研究为增强基于SRB的系统的恢复力和性能提供了基础,为改善环境和工业应用铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4016/12016547/711da6d94b66/aem.02565-24.f001.jpg

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