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具有从头算神经网络动态电荷和自发电荷转移的可极化水模型

Polarizable Water Model with Ab Initio Neural Network Dynamic Charges and Spontaneous Charge Transfer.

作者信息

Liang Qiujiang, Yang Jun

机构信息

Department of Chemistry, The University of Hong Kong, Hong Kong 999077, P.R. China.

Hong Kong Quantum AI Lab Limited, Hong Kong 999077, P.R. China.

出版信息

J Chem Theory Comput. 2025 Apr 8;21(7):3360-3373. doi: 10.1021/acs.jctc.4c01448. Epub 2025 Mar 29.

DOI:10.1021/acs.jctc.4c01448
PMID:40156526
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11983713/
Abstract

Simulating water accurately has been a challenge due to the complexity of describing polarization and intermolecular charge transfer. Quantum mechanical (QM) electronic structures provide an accurate description of polarization in response to local environments, which is nevertheless too expensive for large water systems. In this study, we have developed a polarizable water model integrating Charge Model 5 atomic charges at the level of the second-order Mo̷ller-Plesset perturbation theory, predicted by an accurate and transferable charge neural network (ChargeNN) model. The spontaneous intermolecular charge transfer has been explicitly accounted for, enabling a precise treatment of hydrogen bonds and out-of-plane polarization. Our ChargeNN water model successfully reproduces various properties of water in gas, liquid, and solid phases. For example, ChargeNN correctly captures the hydrogen-bond stretching peak and bending-libration combination band, which are absent in the spectra using fixed charges, highlighting the significance of accurate polarization and charge transfer. Finally, the molecular dynamical simulations using ChargeNN for liquid water and a large water droplet with a ∼4.5 nm radius reveal that the strong interfacial electric fields are concurrently induced by the partial collapse of the hydrogen-bond network and surface-to-interior charge transfer. Our study paves the way for QM-polarizable force fields, aiming for large-scale molecular simulations with high accuracy.

摘要

由于描述极化和分子间电荷转移的复杂性,精确模拟水一直是一项挑战。量子力学(QM)电子结构能够精确描述极化对局部环境的响应,然而对于大型水体系来说计算成本过高。在本研究中,我们开发了一种可极化水模型,该模型在二阶莫勒-普列斯特定理(Mo̷ller-Plesset perturbation theory)水平上整合了由精确且可转移的电荷神经网络(ChargeNN)模型预测的5号电荷模型原子电荷。明确考虑了自发的分子间电荷转移,从而能够精确处理氢键和面外极化。我们的ChargeNN水模型成功再现了水在气相、液相和固相中的各种性质。例如,ChargeNN正确捕捉到了氢键拉伸峰和弯曲-振动组合带,而在使用固定电荷的光谱中这些峰是不存在的,这突出了精确极化和电荷转移的重要性。最后,使用ChargeNN对液态水和半径约为4.5 nm的大水滴进行分子动力学模拟表明,氢键网络的部分坍塌和表面到内部的电荷转移同时诱导了强界面电场。我们的研究为QM可极化力场铺平了道路,旨在实现高精度的大规模分子模拟。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/41dabab9528a/ct4c01448_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/fc466582745b/ct4c01448_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/9a85f27bf8b5/ct4c01448_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/50a99b61453b/ct4c01448_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/0516fc41c2f6/ct4c01448_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/c5edf6d252fa/ct4c01448_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/41dabab9528a/ct4c01448_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/fc466582745b/ct4c01448_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/9a85f27bf8b5/ct4c01448_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/50a99b61453b/ct4c01448_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/0516fc41c2f6/ct4c01448_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/c5edf6d252fa/ct4c01448_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d0a/11983713/41dabab9528a/ct4c01448_0006.jpg

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2
A comprehensive electron wavefunction analysis toolbox for chemists, Multiwfn.一款面向化学家的综合电子波函数分析工具箱——Multiwfn。
J Chem Phys. 2024 Aug 28;161(8). doi: 10.1063/5.0216272.
3
Explainable chemical artificial intelligence from accurate machine learning of real-space chemical descriptors.
基于实空间化学描述符的精确机器学习实现可解释的化学人工智能。
Nat Commun. 2024 May 21;15(1):4345. doi: 10.1038/s41467-024-48567-9.
4
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J Phys Chem A. 2024 May 23;128(20):4160-4167. doi: 10.1021/acs.jpca.4c01287. Epub 2024 May 8.
5
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Nat Commun. 2024 Apr 30;15(1):3670. doi: 10.1038/s41467-024-47879-0.
6
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J Phys Chem B. 2024 Feb 1;128(4):1091-1097. doi: 10.1021/acs.jpcb.3c07044. Epub 2024 Jan 22.
7
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8
DASH: Dynamic Attention-Based Substructure Hierarchy for Partial Charge Assignment.DASH:用于部分电荷分配的基于动态注意力的子结构层次结构。
J Chem Inf Model. 2023 Oct 9;63(19):6014-6028. doi: 10.1021/acs.jcim.3c00800. Epub 2023 Sep 22.
9
A Status Report on "Gold Standard" Machine-Learned Potentials for Water.关于水的“金标准”机器学习势的现状报告。
J Phys Chem Lett. 2023 Sep 14;14(36):8077-8087. doi: 10.1021/acs.jpclett.3c01791. Epub 2023 Sep 1.
10
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J Chem Theory Comput. 2023 Aug 22;19(16):5439-5449. doi: 10.1021/acs.jctc.3c00518. Epub 2023 Jul 28.