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基于C646的赖氨酸乙酰转移酶CBP和p300的蛋白酶靶向嵌合体降解剂的研发。

Development of C646-Based Proteolysis Targeting Chimeras Degraders of the Lysine Acetyltransferases CBP and p300.

作者信息

Fiorentino Francesco, Spriano Filippo, Tomaselli Daniela, Risi Giorgia, Fabbrizi Emanuele, Pecci Valeria, Nanni Simona, Bertoni Francesco, Rotili Dante, Mai Antonello

机构信息

Department of Drug Chemistry and Technologies, Sapienza University of Rome, P.le A. Moro 5, 00185, Rome, Italy.

Faculty of Biomedical Sciences, Institute of Oncology Research, USI Bellinzona, 6500, Bellinzona, Switzerland.

出版信息

ChemMedChem. 2025 Apr 1:e2400792. doi: 10.1002/cmdc.202400792.

DOI:10.1002/cmdc.202400792
PMID:40165709
Abstract

The alteration of the lysine acetyltransferase activity and protein-protein interactions of the transcriptional co-activators CREB-binding protein (CBP) and p300 is linked to the development of both solid and hematological cancers. To target both functions of CBP/p300, two PROTAC-based chemical degraders are developed by linking the CBP/p300 catalytic inhibitor C646 and the Cereblon (CRBN) ligand thalidomide via polyethylene glycol-based linkers. Both compounds exhibit submicromolar inhibition of CBP/p300 and decrease their levels in the SU-DHL-10 lymphoma cell line at low-micromolar concentrations. Moreover, it is demonstrated that compound 1 recruits CBP/p300 and CRBN in cells and acts as a bona fide PROTAC degrader of CBP/p300 via the ubiquitin-proteasome pathway. Finally, both compounds exhibit low-micromolar antiproliferative activity in different lymphoma cell lines and are more potent than C646. Overall, it is demonstrated that the PROTAC strategy is a viable option for targeting CBP/p300 in lymphoma and identifies compound 1 as a promising chemical tool and lead compound for further studies.

摘要

赖氨酸乙酰转移酶活性的改变以及转录共激活因子 CREB 结合蛋白(CBP)和 p300 的蛋白质 - 蛋白质相互作用与实体癌和血液系统癌症的发生发展均有关联。为了针对 CBP/p300 的这两种功能,通过基于聚乙二醇的连接子将 CBP/p300 催化抑制剂 C646 和 Cereblon(CRBN)配体沙利度胺连接起来,开发了两种基于 PROTAC 的化学降解剂。这两种化合物对 CBP/p300 均表现出亚微摩尔级别的抑制作用,并在低微摩尔浓度下降低了它们在 SU-DHL-10 淋巴瘤细胞系中的水平。此外,还证明了化合物 1 在细胞中招募 CBP/p300 和 CRBN,并通过泛素 - 蛋白酶体途径作为 CBP/p300 的真正 PROTAC 降解剂发挥作用。最后,这两种化合物在不同的淋巴瘤细胞系中均表现出低微摩尔级别的抗增殖活性,且比 C646 更有效。总体而言,证明了 PROTAC 策略是针对淋巴瘤中 CBP/p300 的可行选择,并将化合物 1 鉴定为有前景的化学工具和用于进一步研究的先导化合物。

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本文引用的文献

1
Discovery and Characterization of Active CBP/EP300 Degraders Targeting the HAT Domain.靶向HAT结构域的活性CBP/EP300降解剂的发现与表征
ACS Med Chem Lett. 2024 Jan 26;15(3):355-361. doi: 10.1021/acsmedchemlett.3c00490. eCollection 2024 Mar 14.
2
Discovery of CBPD-268 as an Exceptionally Potent and Orally Efficacious CBP/p300 PROTAC Degrader Capable of Achieving Tumor Regression.发现 CBPD-268 是一种效力极强的、可口服的 CBP/p300 PROTAC 降解剂,能够实现肿瘤消退。
J Med Chem. 2024 Apr 11;67(7):5275-5304. doi: 10.1021/acs.jmedchem.3c02124. Epub 2024 Mar 13.
3
Discovery of Novel PROTAC Degraders of p300/CBP as Potential Therapeutics for Hepatocellular Carcinoma.
发现新型 p300/CBP 的 PROTAC 降解剂作为治疗肝细胞癌的潜在疗法。
J Med Chem. 2024 Feb 22;67(4):2466-2486. doi: 10.1021/acs.jmedchem.3c01468. Epub 2024 Feb 5.
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Unusual localization and clinical presentation of primary central nervous system extranodal marginal zone B‑cell lymphoma: A case report.原发性中枢神经系统结外边缘区B细胞淋巴瘤的不寻常定位及临床表现:一例报告
Oncol Lett. 2023 Aug 4;26(3):408. doi: 10.3892/ol.2023.13994. eCollection 2023 Sep.
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Discovery of Exceptionally Potent, Selective, and Efficacious PROTAC Degraders of CBP and p300 Proteins.发现具有超强效力、高选择性且高效的CBP和p300蛋白PROTAC降解剂。
J Med Chem. 2023 Jun 22;66(12):8178-8199. doi: 10.1021/acs.jmedchem.3c00492. Epub 2023 Jun 5.
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First-in-Class Selective Inhibitors of the Lysine Acetyltransferase KAT8.首例赖氨酸乙酰转移酶 KAT8 的选择性抑制剂。
J Med Chem. 2023 May 25;66(10):6591-6616. doi: 10.1021/acs.jmedchem.2c01937. Epub 2023 May 8.
7
Analysis and therapeutic targeting of the EP300 and CREBBP acetyltransferases in anaplastic large cell lymphoma and Hodgkin lymphoma.分析和治疗靶向 EP300 和 CREBBP 乙酰转移酶在间变大细胞淋巴瘤和霍奇金淋巴瘤中的作用。
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Int J Mol Sci. 2022 Apr 6;23(7):4048. doi: 10.3390/ijms23074048.
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Transcriptomic and genomic studies classify NKL54 as a histone deacetylase inhibitor with indirect influence on MEF2-dependent transcription.转录组学和基因组学研究将 NKL54 归类为组蛋白去乙酰化酶抑制剂,其对 MEF2 依赖性转录有间接影响。
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