Department of Biosciences & Informatics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan.
Molecules. 2024 Jun 21;29(13):2956. doi: 10.3390/molecules29132956.
Cooperation between catabolism and anabolism is crucial for maintaining homeostasis in living cells. The most fundamental systems for catabolism and anabolism are the glycolysis of sugars and the transcription-translation (TX-TL) of DNA, respectively. Despite their importance in living cells, the in vitro reconstitution of their cooperation through purified factors has not been achieved, which hinders the elucidation of the design principle in living cells. Here, we reconstituted glycolysis using sugars and integrated it with the PURE system, a commercial in vitro TX-TL kit composed of purified factors. By optimizing key parameters, such as glucokinase and initial phosphate concentrations, we determined suitable conditions for their cooperation. The optimized system showed protein synthesis at up to 33% of that of the original PURE system. We observed that ATP consumption in upstream glycolysis inhibits TX-TL and that this inhibition can be alleviated by the co-addition of glycolytic intermediates, such as glyceraldehyde 3-phosphate, with glucose. Moreover, the system developed here simultaneously synthesizes a subset of its own enzymes, that is, glycolytic enzymes, in a single test tube, which is a necessary step toward self-replication. As glycolysis and TX-TL provide building blocks for constructing cells, the integrated system can be a fundamental material for reconstituting living cells from purified factors.
在活细胞中,分解代谢和合成代谢之间的合作是维持体内平衡的关键。糖酵解和 DNA 的转录-翻译(TX-TL)分别是分解代谢和合成代谢的最基本系统。尽管它们在活细胞中很重要,但通过纯化因子体外重建它们的合作尚未实现,这阻碍了对活细胞设计原理的阐明。在这里,我们使用糖重新构建了糖酵解,并将其与 PURE 系统集成在一起,PURE 系统是一种由纯化因子组成的商业体外 TX-TL 试剂盒。通过优化关键参数,如葡萄糖激酶和初始磷酸盐浓度,我们确定了它们合作的合适条件。优化后的系统显示蛋白质合成率最高可达原始 PURE 系统的 33%。我们观察到上游糖酵解中的 ATP 消耗抑制了 TX-TL,并且这种抑制可以通过与葡萄糖一起共添加糖酵解中间产物,如 3-磷酸甘油醛来缓解。此外,该系统还可以在单个试管中同时合成其自身的一组酶,即糖酵解酶,这是在单个试管中进行自我复制的必要步骤。由于糖酵解和 TX-TL 为构建细胞提供了构建模块,因此集成系统可以作为从纯化因子中重建活细胞的基本材料。