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利用PROTAC技术推进靶点验证

Advancing target validation with PROTAC technology.

作者信息

Spitz M Leora, Kashkush Aseel, Benhamou Raphael I

机构信息

The Institute for Drug Research, School of Pharmacy, Faculty of Medicine, The Hebrew University, Jerusalem, Israel.

出版信息

Expert Opin Drug Discov. 2025 May;20(5):551-563. doi: 10.1080/17460441.2025.2490248. Epub 2025 Apr 10.

DOI:10.1080/17460441.2025.2490248
PMID:40188374
Abstract

INTRODUCTION

Targeted protein degradation (TPD) is a cutting-edge technology that provides new avenues for drug discovery and development. PROteolysis TArgeting Chimeras (PROTACs) are the most established and advanced TPD strategy, enabling the selective degradation of disease-associated and 'undruggable' proteins of interest (POIs) by leveraging the cell's natural protein degradation machinery. To confirm that PROTAC-induced proximity drives protein degradation, target validation and ternary complex formation must be thoroughly assessed.

AREAS COVERED

In this perspective, the authors detail some of the most widely used , structural, , and methods to validate PROTAC target engagement and ternary complex formation. Additionally, they discuss the growing use of PROTACs as chemical probes for novel target identification and validation.

EXPERT OPINION

Target validation is essential in the PROTAC approach, and ongoing studies should prioritize confirming ternary complex formation using assays conducted under physiologically relevant cellular conditions. Proteomics analyses are among the most valuable tools for elucidating PROTAC mechanisms, selectivity, and outcomes. The authors are optimistic about the future of PROTACs in drug development and their use as probes to confirm target engagement. PROTAC technology holds vast opportunities for future exploration, offering significant potential to further both chemical and biological research.

摘要

引言

靶向蛋白质降解(TPD)是一项前沿技术,为药物发现和开发提供了新途径。蛋白酶靶向嵌合体(PROTACs)是最成熟、最先进的TPD策略,通过利用细胞的天然蛋白质降解机制,能够选择性降解与疾病相关的和“不可成药”的目标蛋白(POIs)。为了确认PROTAC诱导的接近性驱动蛋白质降解,必须全面评估靶点验证和三元复合物形成。

涵盖领域

在这篇综述中,作者详细介绍了一些最广泛使用的、用于验证PROTAC靶点结合和三元复合物形成的结构、生化和细胞方法。此外,他们还讨论了PROTACs作为新型靶点鉴定和验证的化学探针的日益广泛的应用。

专家观点

靶点验证在PROTAC方法中至关重要,正在进行的研究应优先使用在生理相关细胞条件下进行的实验来确认三元复合物的形成。蛋白质组学分析是阐明PROTAC机制、选择性和结果的最有价值的工具之一。作者对PROTACs在药物开发中的未来以及它们作为确认靶点结合的探针的应用持乐观态度。PROTAC技术为未来的探索提供了巨大机遇,为进一步推动化学和生物学研究具有巨大潜力。

相似文献

1
Advancing target validation with PROTAC technology.利用PROTAC技术推进靶点验证
Expert Opin Drug Discov. 2025 May;20(5):551-563. doi: 10.1080/17460441.2025.2490248. Epub 2025 Apr 10.
2
Application of mass spectrometry for the advancement of PROTACs.质谱技术在PROTACs研究进展中的应用。
J Pharm Biomed Anal. 2025 Aug 15;261:116829. doi: 10.1016/j.jpba.2025.116829. Epub 2025 Mar 19.
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ET-PROTACs: modeling ternary complex interactions using cross-modal learning and ternary attention for accurate PROTAC-induced degradation prediction.ET-PROTACs:使用跨模态学习和三元注意力对三元复合物相互作用进行建模,以实现准确的PROTAC诱导降解预测。
Brief Bioinform. 2024 Nov 22;26(1). doi: 10.1093/bib/bbae654.
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Modeling the CRL4A ligase complex to predict target protein ubiquitination induced by cereblon-recruiting PROTACs.基于 CRBN 招募型 PROTAC 预测靶蛋白泛素化的 CRL4A 连接酶复合物建模。
J Biol Chem. 2022 Apr;298(4):101653. doi: 10.1016/j.jbc.2022.101653. Epub 2022 Jan 29.
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A comprehensive primer and review of PROTACs and their In Silico design.
Comput Methods Programs Biomed. 2025 Jun;264:108687. doi: 10.1016/j.cmpb.2025.108687. Epub 2025 Feb 26.
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Advances in designing ternary complexes: Integrating in-silico and biochemical methods for PROTAC optimisation in target protein degradation.三元复合物设计的进展:整合计算机模拟和生化方法以优化靶向蛋白质降解中的PROTAC
Bioorg Chem. 2024 Dec;153:107868. doi: 10.1016/j.bioorg.2024.107868. Epub 2024 Oct 4.
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Monitoring and deciphering protein degradation pathways inside cells.监测和解读细胞内的蛋白质降解途径。
Drug Discov Today Technol. 2019 Apr;31:61-68. doi: 10.1016/j.ddtec.2018.12.001. Epub 2018 Dec 19.
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Frontiers in PROTACs.靶向蛋白降解嵌合体前沿技术
Drug Discov Today. 2021 Oct;26(10):2377-2383. doi: 10.1016/j.drudis.2021.04.010. Epub 2021 Apr 17.
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Strategies for Precise Modulation of Protein Degradation.蛋白质降解精确调控策略
Acc Chem Res. 2025 Apr 15;58(8):1236-1248. doi: 10.1021/acs.accounts.5c00003. Epub 2025 Mar 25.
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Journey of PROTAC: From Bench to Clinical Trial and Beyond.PROTAC的历程:从实验室到临床试验及未来
Biochemistry. 2025 Feb 4;64(3):563-580. doi: 10.1021/acs.biochem.4c00577. Epub 2025 Jan 10.

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