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针对多重耐药性的蛇毒蛋白评估:一项分子动力学研究与动态模拟

evaluation of snake venom proteins against multidrug-resistant : A molecular dynamics study and simulation dynamic.

作者信息

Fouda Maged, Mantargi Mohammad J S, Germoush Mousa O, Sarhan Moustafa, Husein Modather F, Abdel-Daim Mohamed M

机构信息

Biology Department, College of Science, Jouf University, Sakaka, Saudi Arabia.

Department of Pharmaceutical Sciences, Pharmacy Program, Batterjee Medical College, Jeddah, Saudi Arabia.

出版信息

Open Vet J. 2025 Feb;15(2):774-784. doi: 10.5455/OVJ.2025.v15.i2.26. Epub 2025 Feb 28.

Abstract

BACKGROUND

(Mtb), a pathogen that belongs to the M. tuberculosis complex, causes tuberculosis (TB), an infectious bacterial disease. Although it usually affects the lungs and results in pulmonary TB, it can also lead to extra-pulmonary TB by affecting other regions of the body. TB, which ranks first on the list of infectious diseases that kill the most people, affects one-third of the world's population and has a high mortality and morbidity rate. The clinical treatment of active TB infection mainly relies on the use of Isoniazid (INH) in combination with three other drugs-rifampin, pyrazinamide, and ethambutol. However, the situation is getting worse due to the rise of extensively drug-resistant tuberculosis (XDR-TB) and multidrug-resistant tuberculosis (MDR-TB). Finding more effective drugs is always a top priority. In this regard, animal venoms, such as snake toxins, contain antibacterial chemicals that have significant therapeutic properties and prevent bacterial infections and disease progression. This suggests that snake venom is a good natural source of promising novel anti-TB drugs.

AIM

This study examines the snake venom protein's capacity to interrupt the intracellular enzymes of Mtb, which is responsible for the development of MDR-TB in humans.

METHODS

From Research Collaboratory for Structural Bioinformatics (RCSB)-Protein Data Bank, the active protein structure of catalase-peroxidase, RNA polymerase, and snake venom proteins was derived. Using molecular docking software such as PyRx, PyMOL, and Ligplot analyzers the interactions between those proteins and the targeted intracellular proteins were evaluated.

RESULTS

Our findings reveal fascinating affinities and interaction patterns between snake venom proteins and MDR-TB intracellular enzymes. Analysis of the effects of these interactions and their capacity to impair catalase-peroxidase and RNA polymerase showed that proteins were active against the catalase-peroxidase system, whereas proteins were active against the RNA polymerase system.

CONCLUSION

This study highlights a prospective approach for advancing anti-TB agents by using snake venom proteins to inhibit the growth, replication, and transmission of MDR-TB. This will provide a basis for exploring pharmacophore-based drugs to combat MDR-TB infections.

摘要

背景

结核分枝杆菌(Mtb)属于结核分枝杆菌复合群,是引起结核病(TB)的病原体,结核病是一种传染性细菌性疾病。虽然它通常影响肺部并导致肺结核,但也可通过影响身体其他部位导致肺外结核。结核病在致死人数最多的传染病中排名第一,影响着世界三分之一的人口,具有很高的死亡率和发病率。活动性结核感染的临床治疗主要依靠异烟肼(INH)与其他三种药物——利福平、吡嗪酰胺和乙胺丁醇联合使用。然而,由于广泛耐药结核病(XDR-TB)和多重耐药结核病(MDR-TB)的增加,情况正在恶化。寻找更有效的药物一直是首要任务。在这方面,动物毒液,如蛇毒,含有具有显著治疗特性的抗菌化学物质,可预防细菌感染和疾病进展。这表明蛇毒是一种有前景的新型抗结核药物的良好天然来源。

目的

本研究考察蛇毒蛋白阻断Mtb细胞内酶的能力,该酶与人类MDR-TB的发展有关。

方法

从结构生物信息学研究合作实验室(RCSB)-蛋白质数据库中获取过氧化氢酶-过氧化物酶、RNA聚合酶和蛇毒蛋白的活性蛋白结构。使用诸如PyRx、PyMOL和Ligplot分析器等分子对接软件评估这些蛋白与靶向细胞内蛋白之间的相互作用。

结果

我们的研究结果揭示了蛇毒蛋白与MDR-TB细胞内酶之间迷人的亲和力和相互作用模式。对这些相互作用的影响及其损害过氧化氢酶-过氧化物酶和RNA聚合酶能力的分析表明,某些蛋白对过氧化氢酶-过氧化物酶系统有活性,而某些蛋白对RNA聚合酶系统有活性。

结论

本研究突出了一种前瞻性方法,即利用蛇毒蛋白抑制MDR-TB的生长、复制和传播来推进抗结核药物的研发。这将为探索基于药效团的药物来对抗MDR-TB感染提供依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/95a5/11974300/62eef7fe7c5a/OpenVetJ-15-774-g001.jpg

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