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一种关于增强子如何与其靶基因进行通讯的转录偶联模型。

A transcription coupling model for how enhancers communicate with their target genes.

作者信息

Altendorfer Elisabeth, Mundlos Stefan, Mayer Andreas

机构信息

Otto-Warburg-Laboratory, Max Planck Institute for Molecular Genetics, Berlin, Germany.

Development and Disease group, Max Planck Institute for Molecular Genetics, Berlin, Germany.

出版信息

Nat Struct Mol Biol. 2025 Apr;32(4):598-606. doi: 10.1038/s41594-025-01523-7. Epub 2025 Apr 11.

DOI:10.1038/s41594-025-01523-7
PMID:40217119
Abstract

How enhancers communicate with their target genes to influence transcription is an unresolved question of fundamental importance. Current models of the mechanism of enhancer-target gene or enhancer-promoter (E-P) communication are transcription-factor-centric and underappreciate major findings, including that enhancers are themselves transcribed by RNA polymerase II, which correlates with enhancer activity. In this Perspective, we posit that enhancer transcription and its products, enhancer RNAs, are elementary components of enhancer-gene communication. Specifically, we discuss the possibility that transcription at enhancers and at their cognate genes are linked and that this coupling is at the basis of how enhancers communicate with their targets. This model of transcriptional coupling between enhancers and their target genes is supported by growing experimental evidence and represents a synthesis of recent key discoveries.

摘要

增强子如何与它们的靶基因进行通信以影响转录,这是一个尚未解决但具有根本重要性的问题。当前关于增强子-靶基因或增强子-启动子(E-P)通信机制的模型是以转录因子为中心的,并且没有充分重视一些主要发现,包括增强子本身由RNA聚合酶II转录,这与增强子活性相关。在本观点文章中,我们假定增强子转录及其产物,即增强子RNA,是增强子-基因通信的基本组成部分。具体而言,我们讨论了增强子及其同源基因处的转录是相互关联的可能性,并且这种偶联是增强子与其靶标进行通信的基础。增强子与其靶基因之间的这种转录偶联模型得到了越来越多实验证据的支持,并且代表了近期关键发现的综合。

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本文引用的文献

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High-sensitive nascent transcript sequencing reveals BRD4-specific control of widespread enhancer and target gene transcription.高灵敏度新生转录本测序揭示 BRD4 特异性控制广泛的增强子和靶基因转录。
Nat Commun. 2023 Aug 17;14(1):4971. doi: 10.1038/s41467-023-40633-y.
2
The Mediator complex regulates enhancer-promoter interactions.中介复合物调节增强子-启动子相互作用。
Nat Struct Mol Biol. 2023 Jul;30(7):991-1000. doi: 10.1038/s41594-023-01027-2. Epub 2023 Jul 10.
3
Emerging insights into enhancer biology and function.增强子生物学和功能的新见解。
Transcription. 2023 Nov;14(1-2):68-87. doi: 10.1080/21541264.2023.2222032. Epub 2023 Jun 13.
4
Enhancer RNAs in transcriptional regulation: recent insights.转录调控中的增强子RNA:最新见解
Front Cell Dev Biol. 2023 May 17;11:1205540. doi: 10.3389/fcell.2023.1205540. eCollection 2023.
5
What is an enhancer?什么是增强子?
Bioessays. 2023 Oct;45(10):e2300044. doi: 10.1002/bies.202300044. Epub 2023 May 31.
6
Dynamic interplay between non-coding enhancer transcription and gene activity in development.非编码增强子转录与发育过程中基因活性的动态相互作用。
Nat Commun. 2023 Feb 20;14(1):826. doi: 10.1038/s41467-023-36485-1.
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Deciphering the multi-scale, quantitative cis-regulatory code.解析多尺度、定量的顺式调控代码。
Mol Cell. 2023 Feb 2;83(3):373-392. doi: 10.1016/j.molcel.2022.12.032. Epub 2023 Jan 23.
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Enhancer-promoter entanglement explains their transcriptional interdependence.增强子-启动子纠缠解释了它们的转录相互依赖。
Proc Natl Acad Sci U S A. 2023 Jan 24;120(4):e2216436120. doi: 10.1073/pnas.2216436120. Epub 2023 Jan 19.
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Integrator is a global promoter-proximal termination complex.整合因子是一个全局促进-近端终止复合物。
Mol Cell. 2023 Feb 2;83(3):416-427. doi: 10.1016/j.molcel.2022.11.012. Epub 2023 Jan 11.
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Functional partitioning of transcriptional regulators by patterned charge blocks.通过图案化的电荷块对转录调控因子进行功能分区。
Cell. 2023 Jan 19;186(2):327-345.e28. doi: 10.1016/j.cell.2022.12.013. Epub 2023 Jan 4.