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A-to-I RNA编辑检测方法的进展

Advances in Detection Methods for A-to-I RNA Editing.

作者信息

Yang Yuxi, Sakurai Masayuki

机构信息

Research Institute for Biomedical Sciences, Tokyo University of Science, Chiba, Japan.

出版信息

Wiley Interdiscip Rev RNA. 2025 Mar-Apr;16(2):e70014. doi: 10.1002/wrna.70014.

DOI:10.1002/wrna.70014
PMID:40223708
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11995373/
Abstract

Adenosine-to-inosine (A-to-I) RNA editing is a key post-transcriptional modification that influences gene expression and various cellular processes. Advances in sequencing technologies have greatly contributed to the identification of A-to-I editing sites, providing insights into their distribution across coding and non-coding regions. These developments have facilitated the discovery of functionally relevant editing events and have advanced the understanding of their biological roles. This review presents the evolution of methodologies for RNA editing detection and examines recent advances, including chemically-assisted, enzyme-assisted, and quantitative approaches. By evaluating these techniques, we aim to help researchers select the most effective tools for investigating RNA editing and its broader implications in health and disease.

摘要

腺苷到次黄苷(A-to-I)RNA编辑是一种关键的转录后修饰,它影响基因表达和各种细胞过程。测序技术的进步极大地促进了A-to-I编辑位点的识别,为了解它们在编码和非编码区域的分布提供了线索。这些进展推动了功能相关编辑事件的发现,并加深了对其生物学作用的理解。本综述介绍了RNA编辑检测方法的演变,并探讨了近期的进展,包括化学辅助、酶辅助和定量方法。通过评估这些技术,我们旨在帮助研究人员选择最有效的工具来研究RNA编辑及其在健康和疾病中的更广泛影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/62ef367fb080/WRNA-16-e70014-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/5e564d413971/WRNA-16-e70014-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/e27a9665981a/WRNA-16-e70014-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/aab77914c1a7/WRNA-16-e70014-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/813d87e4673d/WRNA-16-e70014-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/1a308188aefd/WRNA-16-e70014-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/62ef367fb080/WRNA-16-e70014-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/5e564d413971/WRNA-16-e70014-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/e27a9665981a/WRNA-16-e70014-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/aab77914c1a7/WRNA-16-e70014-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/813d87e4673d/WRNA-16-e70014-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/1a308188aefd/WRNA-16-e70014-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3500/11995373/62ef367fb080/WRNA-16-e70014-g003.jpg

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本文引用的文献

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Site-specific quantification of Adenosine-to-Inosine RNA editing by Endonuclease-Mediated qPCR.通过内切酶介导的 qPCR 进行腺苷到肌苷 RNA 编辑的位点特异性定量。
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ICLAMP: a novel technique to explore adenosine deamination via inosine chemical labeling and affinity molecular purification.ICLAMP:一种通过肌苷化学标记和亲和分子纯化来探索腺苷脱氨酶的新方法。
FEBS Lett. 2024 May;598(9):1080-1093. doi: 10.1002/1873-3468.14854. Epub 2024 Mar 24.
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Transcriptome-wide profiling of A-to-I RNA editing by Slic-seq.Slic-seq 对 A-to-I RNA 编辑的转录组范围分析。
Nucleic Acids Res. 2023 Sep 8;51(16):e87. doi: 10.1093/nar/gkad604.
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C-to-U and U-to-C: RNA editing in plant organelles and beyond.C 到 U 以及 U 到 C:植物细胞器及其他方面的 RNA 编辑
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Quantitative and site-specific detection of inosine modification in RNA by acrylonitrile labeling-mediated elongation stalling.通过丙烯腈标记介导的延伸停滞对RNA中肌苷修饰进行定量和位点特异性检测。
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Chemical Probe-Based Nanopore Sequencing to Selectively Assess the RNA Modifications.基于化学探针的纳米孔测序选择性评估 RNA 修饰。
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