感染甜菜的甜菜根蛆的转录组样本统计数据。
Transcriptome sample statistics for the sugar beet root maggot () infecting sugar beet.
作者信息
Acharya Sudha, Alkharouf Nadim W, Tehseen Muhammad Massub, Chu Chenggen, Klink Vincent P
机构信息
Department of Computer and Information Sciences, Towson University, Towson, MD, 21252, USA.
USDA-ARS-NA, Northern Great Plains Research Laboratory, 1307 N 18TH ST Northern Crop Science Laboratory, Fargo, ND 58102, USA.
出版信息
Bioinformation. 2024 Dec 31;20(12):1881-1885. doi: 10.6026/9732063002001881. eCollection 2024.
The sugar beet root maggot (SBRM), (von Röder) insect pathogen devastates sugar beet (SB), ssp, vulgaris (), one of only two plants from which significant global raw sugar is produced, $1B, U.S., $4.6 B, globally. Larval SBRMs experiencing F1010 and L19 susceptible or F1016 and F1024 resistant SB responses are RNA sequenced, sampled at time = 0 hours post infection [hpi], 24, 48 and 72 hpi. Transcriptomic analyses determined the number of reads per sample, mapped the transcripts to the recently sequenced SBRM TmSBRM_v1.0 draft genome and identified genes that relate to the resistant and susceptible responses. The RNA-seq study provides data for generating differential expression analyses, yielding an understanding SBRM biology, control strategy development, relationship to model and non-model organisms and aiding sugar beet improvement for stakeholders.
甜菜根蛆（SBRM），（冯·勒德）昆虫病原体对甜菜（SB）造成严重破坏，甜菜亚种为普通甜菜（），是全球仅有的两种用于大量生产原糖的植物之一，在美国价值10亿美元，在全球价值46亿美元。对经历F1010和L19易感或F1016和F1024抗性SB反应的幼虫SBRM进行RNA测序，在感染后0小时[hpi]、24、48和72小时进行采样。转录组分析确定了每个样本的读数数量，将转录本映射到最近测序的SBRM TmSBRM_v1.0草图基因组，并鉴定了与抗性和易感反应相关的基因。RNA测序研究为进行差异表达分析提供了数据，有助于了解SBRM生物学、制定控制策略、了解其与模式生物和非模式生物的关系，并为利益相关者改进甜菜提供帮助。
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