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甜菜根蛆的基因组数据集序列集合,TmSBRM_v1.0

A assembly of genomic dataset sequences of the sugar beet root maggot , TmSBRM_v1.0.

作者信息

Alkharouf Nadim W, Chu Chenggen, Klink Vincent P

机构信息

Department of Computer and Information Sciences, Towson University, Towson, MD 21252, USA.

USDA-ARS-NA- Northern Great Plains Research Laboratory, 1307 N 18TH ST Northern Crop Science Laboratory, Fargo, ND 58102, USA.

出版信息

Data Brief. 2024 Mar 6;54:110298. doi: 10.1016/j.dib.2024.110298. eCollection 2024 Jun.

Abstract

The sugar beet root maggot (SBRM), (von Röder), is a devastating insect pathogen of sugar beet (SB), , ssp vulgaris (), an important food crop, while also being one of only two plants globally from which sugar is widely produced, and accounting for 35% of global raw sugar with an annual farm value of $3 billion in the United States alone. SBRM is the most devastating pathogen of sugar beet in North America. The limited natural resistance of necessitates an understanding of the SBRM genome to facilitate generating knowledge of its basic biology, including the interaction between the pathogen and its host(s). Presented is the de novo assembled draft genome sequence of isolated from field-grown in North Dakota, USA. The SBRM genome sequence TmSBRM_v1.0 will also be valuable for molecular genetic marker development to facilitate host resistance gene identification and knowledge, including SB polygalacturonase inhibiting protein (PGIP), and development of new control strategies for this pathogen, relationship to model genetic organisms like and aid in agronomic improvement of sugar beet for stakeholders while also providing information on the relationship between the SBRM and climate change.

摘要

甜菜根蛆(SBRM),(冯·勒德),是甜菜(SB)的一种毁灭性昆虫病原体,甜菜是一种重要的粮食作物,也是全球仅有的两种广泛用于制糖的植物之一,仅在美国,其年产原糖量就占全球的35%,年农业产值达30亿美元。SBRM是北美甜菜最具毁灭性的病原体。甜菜有限的天然抗性使得了解SBRM基因组变得必要,以便促进对其基本生物学的认识,包括病原体与其宿主之间的相互作用。本文展示的是从美国北达科他州田间种植的甜菜中分离出的SBRM的从头组装基因组序列草图。SBRM基因组序列TmSBRM_v1.0对于分子遗传标记开发也很有价值,有助于宿主抗性基因的鉴定和认识,包括甜菜多聚半乳糖醛酸酶抑制蛋白(PGIP),以及开发针对这种病原体的新控制策略,了解其与模式遗传生物如[具体生物名称未给出]的关系,并有助于为利益相关者进行甜菜的农艺改良,同时还能提供有关SBRM与气候变化之间关系的信息。

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