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错配尿嘧啶DNA糖基化酶(Mug)存在于伪结核棒状杆菌基因组中,对尿嘧啶具有亲和力,但对其他类型的损伤没有亲和力。

Mismatch uracil DNA glycosylase (Mug) is maintained in the Corynebacterium pseudotuberculosis genome and exhibits affinity for uracil but not other types of damage.

作者信息

Resende Bruno Carvalho, Cassiano Cássio Siqueira Souza, Rios Diego Lisboa, Ladeira Thalia Queiroz, Azevedo Vasco Ariston Carvalho, Santos Luciana Lara Dos, Valenzuela-Pérez Lucía, Cabrera Gonzalo, Machado Carlos Renato, Lopes Débora de Oliveira

机构信息

Universidade Federal de Minas Gerais (UFMG), Instituto de Ciências Biológicas (ICB), Belo Horizonte, MG, Brazil.

Universidade Federal de São João Del-Rei (UFSJ), Divinópolis, MG, Brazil.

出版信息

Genet Mol Biol. 2025 Apr 14;48(2):e20230353. doi: 10.1590/1678-4685-GMB-2023-0353. eCollection 2025.

Abstract

The genome of Corynebacterium pseudotuberculosis, etiologic agent of Caseous Lymphadenitis (CLA), was sequenced to comprehend its genetics, pathogenicity, and virulence mechanisms due to its economic importance. A focus was placed on the G/U mismatch-specific DNA glycosylase (Mug), an enzyme vital for base excision repair in DNA that can play an important role in uracil repair, since the high G+C content of C. pseudotuberculosis makes it prone to deamination events, accentuating the potential significance of Mug. Through in silico and in vitro analyses, the Corynebacterium pseudotuberculosis Mug protein (CpMug) was characterized to confirm its DNA glycosylase activity and lesion affinity. The mug gene was identified in both pathogenic and non-pathogenic Corynebacterium species, lacking a discernible ancestry pattern. Bioinformatics analyses revealed the preservation of essential uracil DNA glycosylase catalytic residues in CpMug. The 3D structure of CpMug was constructed, and molecular docking analysis demonstrated its interaction with DNA containing uracil and other lesions. Comparative analyses revealed a higher affinity of CpMug's catalytic residues for uracil over other DNA lesions and enzymatic assays with purified CpMug affirmed its uracil DNA glycosylase activity, while it exhibited no activity on 8-oxoguanine, tetrahydrofuran, or thymine glycol, consistent with computational simulations.

摘要

由于其经济重要性,对干酪性淋巴结炎(CLA)的病原体——伪结核棒状杆菌的基因组进行了测序,以了解其遗传、致病和毒力机制。研究重点放在了G/U错配特异性DNA糖基化酶(Mug)上,该酶对DNA碱基切除修复至关重要,在尿嘧啶修复中可能发挥重要作用,因为伪结核棒状杆菌的高G+C含量使其易于发生脱氨基事件,凸显了Mug的潜在重要性。通过计算机模拟和体外分析,对伪结核棒状杆菌Mug蛋白(CpMug)进行了表征,以确认其DNA糖基化酶活性和对损伤的亲和力。在致病性和非致病性棒状杆菌物种中均鉴定出了mug基因,且缺乏明显的谱系模式。生物信息学分析表明CpMug中必需的尿嘧啶DNA糖基化酶催化残基得以保留。构建了CpMug的三维结构,分子对接分析表明其与含有尿嘧啶和其他损伤的DNA相互作用。比较分析显示,CpMug的催化残基对尿嘧啶的亲和力高于其他DNA损伤,用纯化的CpMug进行的酶活性测定证实了其尿嘧啶DNA糖基化酶活性,而它对8-氧鸟嘌呤、四氢呋喃或胸腺嘧啶二醇无活性,这与计算模拟结果一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/32d7/12001322/005a3784590d/1415-4757-GMB-48-02-e20230353-gf1.jpg

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