Bae Hee-Won, Choi Shin-Yae, Ki Hyeong-Jun, Cho You-Hee
Program of Biopharmaceutical Science, Department of Pharmacy, College of Pharmacy and Institute of Pharmaceutical Sciences, CHA University, Gyeonggi-do 13488, Korea.
FEMS Microbiol Rev. 2025 Jan 14;49. doi: 10.1093/femsre/fuaf014.
Bacteriophages, or phages, depend on their bacterial hosts for proliferation, leading to a coevolutionary relationship characterized by on-going arms races, where bacteria evolve diverse antiphage defense systems. The development of in silico methods and high-throughput screening techniques has dramatically expanded our understanding of bacterial antiphage defense systems, enormously increasing the known repertoire of the distinct mechanisms across various bacterial species. These advances have revealed that bacterial antiphage defense systems exhibit a remarkable level of complexity, ranging from highly conserved to specialized mechanisms, underscoring the intricate nature of bacterial antiphage defense systems. In this review, we provide a concise snapshot of antiphage defense research highlighting two preponderantly commandeered approaches and classification of the known antiphage defense systems. A special focus is placed on the model bacterial pathogen, Pseudomonas aeruginosa in antiphage defense research. We explore the complexity and adaptability of these systems, which play crucial roles in genome evolution and adaptation of P. aeruginosa in response to an arsenal of diverse phage strains, emphasizing the importance of this organism as a key emerging model bacterium in recent antiphage defense research.
噬菌体,或称噬菌体能依赖其细菌宿主进行增殖,从而形成一种以持续的军备竞赛为特征的共同进化关系,在此过程中细菌进化出多种抗噬菌体防御系统。计算机模拟方法和高通量筛选技术的发展极大地扩展了我们对细菌抗噬菌体防御系统的理解,极大地增加了已知的各种细菌物种独特机制的种类。这些进展表明,细菌抗噬菌体防御系统表现出显著的复杂性,从高度保守的机制到专门的机制不等,突显了细菌抗噬菌体防御系统的复杂本质。在这篇综述中,我们简要概述了抗噬菌体防御研究,重点介绍了两种主要采用的方法以及已知抗噬菌体防御系统的分类。特别关注了抗噬菌体防御研究中的模式细菌病原体铜绿假单胞菌。我们探讨了这些系统的复杂性和适应性,它们在铜绿假单胞菌的基因组进化和对多种噬菌体菌株的适应中发挥着关键作用,强调了这种生物体作为近期抗噬菌体防御研究中关键的新兴模式细菌的重要性。