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阿拉霉素及其衍生物的生物合成途径:来自sp. A012304的卟啉生物合成中胆色素原合酶的抑制剂

Biosynthetic Pathways of Alaremycin and Its Derivative: Inhibitors of Porphobilinogen Synthase in Porphyrin Biosynthesis from sp. A012304.

作者信息

Okui Mio, Noto Yuki, Kawaguchi Jun, Iwai Noritaka, Wachi Masaaki

机构信息

Department of Life Science and Technology, Institute of Science Tokyo, Yokohama 226-8501, Japan.

出版信息

ACS Bio Med Chem Au. 2025 Mar 7;5(2):310-319. doi: 10.1021/acsbiomedchemau.5c00045. eCollection 2025 Apr 16.

Abstract

The antibiotic alaremycin (5-acetamido-4-oxo-5-hexenoic acid, ), isolated from sp. A012304, structurally resembles 5-aminolevulinic acid (ALA), a precursor in porphyrin biosynthesis, and inhibits porphobilinogen synthase, the enzyme responsible for catalyzing the first common step of this pathway. In our previous study, the biosynthetic gene cluster responsible for alaremycin production-composed of (ALA synthase homologue), (-acetyltransferase), (oxidoreductase), and (MFS-type transporter)-was identified, and a potential biosynthetic pathway was proposed. In this study, the biosynthetic pathway of was confirmed by detecting intermediates using the liquid chromatography-mass spectrometry/MS (LC-MS/MS) analysis of extracts from cells transformed with the biosynthetic genes, followed by reconstitution of the biosynthetic reactions using purified enzymes. AlmA catalyzed the condensation of l-serine and succinyl-CoA to produce 5-amino-6-hydroxy-4-oxohexanoic acid (), AlmB catalyzed the -acetylation of to produce 5-acetamido-6-hydroxy-4-oxohexanoic acid (), and AlmC catalyzed the dehydration of to form . The AlmC-catalyzed reaction may involve a two-step mechanism including reduction by NADH and oxidation by Fe. Additionally, a novel derivative of was identified in the culture broth of the producer strain, and its structure was determined as 5,6-dihydroalaremycin (5-acetamido-4-oxohexanoic acid, ). It was revealed that is synthesized via the same biosynthetic pathway but with AlmA and AlmB utilizing l-alanine as the amino acid precursor instead of l-serine.

摘要

从链霉菌属sp. A012304中分离得到的抗生素阿拉霉素(5-乙酰氨基-4-氧代-5-己烯酸)在结构上类似于5-氨基乙酰丙酸(ALA),后者是卟啉生物合成中的一种前体,并且阿拉霉素可抑制胆色素原合酶,该酶负责催化此途径的首个共同步骤。在我们之前的研究中,已鉴定出负责阿拉霉素产生的生物合成基因簇,该基因簇由AlmA(ALA合酶同源物)、AlmB(N-乙酰转移酶)、AlmC(氧化还原酶)和AlmD(MFS型转运蛋白)组成,并提出了一条潜在的生物合成途径。在本研究中,通过对用生物合成基因转化的链霉菌细胞提取物进行液相色谱-质谱联用/质谱(LC-MS/MS)分析来检测中间体,随后使用纯化的酶对生物合成反应进行重构,从而证实了阿拉霉素的生物合成途径。AlmA催化L-丝氨酸和琥珀酰辅酶A缩合生成5-氨基-6-羟基-4-氧代己酸(AHA),AlmB催化AHA的N-乙酰化反应生成5-乙酰氨基-6-羟基-4-氧代己酸(AAHA),并且AlmC催化AAHA脱水形成阿拉霉素。AlmC催化的反应可能涉及一个两步机制,包括由NADH还原和由Fe氧化。此外,在产生菌的培养液中鉴定出一种阿拉霉素的新型衍生物,其结构被确定为5,6-二氢阿拉霉素(5-乙酰氨基-4-氧代己酸)。结果表明,5,6-二氢阿拉霉素是通过相同的生物合成途径合成的,但AlmA和AlmB利用L-丙氨酸作为氨基酸前体而非L-丝氨酸。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2563/12006855/a157f16a27ce/bg5c00045_0001.jpg

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