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蝗虫(Zub.)(直翅目:蝗科:斑翅蝗亚科)的完整线粒体基因组:详细特征及系统发育位置

The complete mitochondrial genome of the grasshopper (Zub.) (Orthoptera: Acrididae: Gomphocerinae): detailed characterization and phylogenetic position.

作者信息

Liu Xiaoli, Fu Yun, Liu Jizhuang, Li Xinxin, Li Yuan, Meng Di, Hu Yang, Sun Tao

机构信息

College of Life Science, Huaibei Normal University, Huaibei, China.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2025 Apr-May;35(3-4):111-118. doi: 10.1080/24701394.2024.2446772. Epub 2024 Dec 30.

DOI:10.1080/24701394.2024.2446772
PMID:40264337
Abstract

(Zub.) is one of the dominant grasshopper species. The limited data on (Zub.) has impeded further understanding of its genetic characteristics and molecular detection. In this study, we analyzed the mitogenome of (Zub.), which was 15,561 bp in length and contained 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes and an AT-rich region. The entire mtDNA exhibited a strong AT bias, with an overall A+T content of 74.8%. The relative synonymous codon usage (RSCU) analysis revealed UUA (L) as the most frequently used codon. All the PCGs evolved under purifying selection (Ka/Ks <0.5), with gene exhibited the highest Ka/Ks ratio. Maximum likelihood (ML) and Bayesian inference (BI) analyses reconstructed two topologically similar phylogenetic trees, and supported the monophly of the six subfamilies in Acrididae. Our results indicated two stable clades of the six subfamilies, with Oedipodinae emerging as the ancestral taxon and being sister group to the remaining taxa. In the alternative phylogenetic lineage, the remaining five subfamilies clustered the following relationship: Gomphocernae + (Acridinae + (Calliptaminae + (Melanoplinae + Oxyinae))). Both phylogenetic trees exhibited a closer relationship between (Zub.) and , members from the same genus.

摘要

(祖布)是优势蝗虫种类之一。关于(祖布)的有限数据阻碍了对其遗传特征和分子检测的进一步了解。在本研究中,我们分析了(祖布)的线粒体基因组,其长度为15561 bp,包含13个蛋白质编码基因(PCG)、22个tRNA基因、2个rRNA基因和一个富含AT的区域。整个线粒体DNA表现出强烈的AT偏好,A+T总含量为74.8%。相对同义密码子使用(RSCU)分析表明UUA(L)是最常用的密码子。所有PCG都在纯化选择下进化(Ka/Ks<0.5),其中基因表现出最高的Ka/Ks比值。最大似然(ML)和贝叶斯推断(BI)分析重建了两个拓扑结构相似的系统发育树,并支持蝗科六个亚科的单系性。我们的结果表明六个亚科有两个稳定的分支,其中斑翅蝗亚科作为祖先类群出现,并与其余类群构成姐妹群。在另一个系统发育谱系中,其余五个亚科聚类形成以下关系:瘤锥蝗族+(蝗亚科+(皱腹蝗亚科+(黑蝗亚科+尖翅蝗亚科)))。两个系统发育树都显示(祖布)与同一属的成员之间关系更密切。

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