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一种用于检测新型鸭蛋减少综合征的逆转录定量聚合酶链反应检测方法的开发

Development of an RT-qPCR Assay for the Detection of an Emerging Duck Egg-Reducing Syndrome.

作者信息

Zhang Zhifei, Su Xin, Shuo Dun, Yan Dawei, Pan Xue, Xu Bangfeng, Yan Minghao, Ren Shuxuan, Liu Qinfang, Yuan Chunxiu, Teng Qiaoyang, Li Zejun

机构信息

Department of Avian Infectious Diseases, Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Shanghai 200241, China.

出版信息

Vet Sci. 2025 Mar 3;12(3):241. doi: 10.3390/vetsci12030241.

DOI:10.3390/vetsci12030241
PMID:40266929
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11946190/
Abstract

Duck egg-reducing syndrome virus (DERSV) is a novel Avihepatovirus and is responsible for a gradual decline in the laying rate of ducks, decreasing from a peak of 90% to 50%. The development of a rapid detection method for DERSV is crucial for the identification and control of virus infections. In this study, we developed a quantitative reverse transcription PCR (RT-qPCR) assay for detecting DERSV. Specific primers and a probe were designed to target a conserved region of the 3D gene. The assay demonstrated high specificity, with no cross-reactivity to other non-target duck viruses. It had a detection limit of 10 copies and a linear range from 10 to 10 copies per reaction. The assay's efficiency was 92.59%, with a regression coefficient (R) of 0.999. The coefficient of variation for both intra-and inter-assays was less than 2.00%. Among the 153 clinical samples collected from 2016 to 2023, the RT-qPCR detected a DERSV positive ratio of 47.06% (72/153). In conclusion, the utilization of the real-time RT-qPCR assay holds potential for the detection of DERSV in epidemiological and pathogenesis studies.

摘要

鸭减蛋综合征病毒(DERSV)是一种新型禽肝病毒,可导致鸭产蛋率逐渐下降,从峰值90%降至50%。开发一种快速检测DERSV的方法对于病毒感染的鉴定和控制至关重要。在本研究中,我们开发了一种用于检测DERSV的定量逆转录PCR(RT-qPCR)检测方法。设计了特异性引物和探针,靶向3D基因的保守区域。该检测方法具有高度特异性,与其他非目标鸭病毒无交叉反应。其检测限为10个拷贝,每个反应的线性范围为10至10拷贝。该检测方法的效率为92.59%,回归系数(R)为0.999。批内和批间变异系数均小于2.00%。在2016年至2023年收集的153份临床样本中,RT-qPCR检测到DERSV阳性率为47.06%(72/153)。总之,实时RT-qPCR检测方法在流行病学和发病机制研究中检测DERSV具有潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ba9/11946190/bb33fb00947f/vetsci-12-00241-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ba9/11946190/5a68b766cd74/vetsci-12-00241-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ba9/11946190/7ae343758251/vetsci-12-00241-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ba9/11946190/bb33fb00947f/vetsci-12-00241-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ba9/11946190/5a68b766cd74/vetsci-12-00241-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ba9/11946190/7ae343758251/vetsci-12-00241-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ba9/11946190/bb33fb00947f/vetsci-12-00241-g003.jpg

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本文引用的文献

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Res Vet Sci. 2023 Jun;159:232-236. doi: 10.1016/j.rvsc.2023.04.005. Epub 2023 Apr 15.
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Development of a rapid and sensitive reverse transcription real-time quantitative PCR assay for detection and quantification of grass carp reovirus II.用于检测和定量草鱼呼肠孤病毒II的快速灵敏逆转录实时定量PCR检测方法的建立。
J Virol Methods. 2023 Feb;312:114663. doi: 10.1016/j.jviromet.2022.114663. Epub 2022 Nov 28.
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Whole-genome characterization of avian picornaviruses from diarrheic broiler chickens co-infected with multiple picornaviruses in Iran.
伊朗腹泻肉鸡中多种小核糖核酸病毒混合感染的禽小核糖核酸病毒的全基因组特征。
Virus Genes. 2023 Feb;59(1):79-90. doi: 10.1007/s11262-022-01938-0. Epub 2022 Oct 14.
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An Emerging Duck Egg-Reducing Syndrome Caused by a Novel Picornavirus Containing Seven Putative 2A Peptides.一种新型小核糖核酸病毒引起的新兴鸭蛋减少综合征,该病毒包含七个推定的 2A 肽。
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5
Establishment of Duplex SYBR Green I-based Real-time PCR Assay for Simultaneous Detection of Duck Hepatitis A Virus-1 and Duck Astrovirus-3.建立基于双重 SYBR Green I 的实时 PCR 检测方法,用于同时检测鸭甲型肝炎病毒-1 和鸭星状病毒-3。
Avian Dis. 2021 Jun;65(2):281-286. doi: 10.1637/aviandiseases-D-20-00115.
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Nucleocytoplasmic Trafficking Perturbation Induced by Picornaviruses.微小 RNA 干扰靶向 A 型流感病毒 NS1 基因抑制病毒复制及其对宿主细胞凋亡的影响
Viruses. 2021 Jun 23;13(7):1210. doi: 10.3390/v13071210.
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