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TaqMan 实时 PCR 检测法结合宿主特异性对经典鹅细小病毒和新型鹅细小病毒的特异性检测和区分。

Specific detection and differentiation of classic goose parvovirus and novel goose parvovirus by TaqMan real-time PCR assay, coupled with host specificity.

机构信息

Institute of Animal Husbandry and Veterinary Medicine of Fujian Academy of Agricultural Sciences, Fuzhou, 350013, China.

Fujian Provincial Key Laboratory for Avian Diseases Control and Prevention & Fujian Animal Diseases Control Technology Development Center, Fuzhou, 350013, China.

出版信息

BMC Vet Res. 2019 Nov 1;15(1):389. doi: 10.1186/s12917-019-2090-7.

DOI:10.1186/s12917-019-2090-7
PMID:31676004
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6823957/
Abstract

BACKGROUND

Classic goose parvovirus (cGPV) causes high mortality and morbidity in goslings and Muscovy ducklings. Novel GPV (N-GPV) causes short beak and dwarfism syndrome (SBDS) in Cherry Valley ducks, Pekin ducks and Mule ducks. Both cGPV and N-GPV have relatively strict host specificity, with obvious differences in pathogenicity. Specific detection of cGPV and N-GPV may result in false positives due to high nucleotide similarity with Muscovy duck parvovirus (MDPV). The aim of this study was to develop a highly specific, sensitive, and reliable TaqMan real-time PCR (TaqMan qPCR) assay for facilitating the molecular detection of cGPV and N-GPV.

RESULTS

After genetic comparison, the specific conserved region (located on the NS gene) of cGPV and N-GPV was selected for primer and probe design. The selected regions were significantly different from MDPV. Through a series of optimization experiments, the limit of detection was 50.2 copies/μl. The assay was highly specific for the detection of cGPV and N-GPV and no cross-reactivity was observed with E. coli., P.M., R.A., S.S., MDPV, N-MDPV, DAdV-A, DEV, GHPV, DHAV-1, DHAV-3, ATmV, AIV, MDRV and N-DRV. The assay was reproducible with an intra-assay and inter-assay variability of less than 2.37%. Combined with host specificity, the developed TaqMan qPCR can be used for cGPV and N-GPV in differential diagnoses. The frequency of cGPV in Muscovy duckling and goslings was determined to be 12 to 44%, while N-GPV frequency in Mule ducks and Cherry Valley ducks was 36 to 56%. Additionally, fluorescence-positive signals can be found in Mule duck embryos and newly hatched Mule ducklings. These findings provide evidence of possible vertical transmission of N-GPV from breeding Mule ducks to ducklings.

CONCLUSIONS

We established a quantitative platform for epidemiological investigations and pathogenesis studies of cGPV and N-GPV DNA that was highly sensitive, specific, and reproducible. N-GPV and cGPV infections can be distinguished based on host specificity.

摘要

背景

经典鹅细小病毒(cGPV)可导致鹅苗和麝香鸭苗高死亡率和高发病率。新型鹅细小病毒(N-GPV)可导致樱桃谷鸭、北京鸭和骡鸭发生短喙矮小综合征(SBDS)。cGPV 和 N-GPV 均具有相对严格的宿主特异性,其致病性存在明显差异。由于与麝香鸭细小病毒(MDPV)的核苷酸相似度较高,因此对 cGPV 和 N-GPV 的特异性检测可能会导致假阳性。本研究旨在开发一种高度特异、敏感、可靠的 TaqMan 实时 PCR(TaqMan qPCR)检测方法,以促进 cGPV 和 N-GPV 的分子检测。

结果

通过遗传比较,选择 cGPV 和 N-GPV 的特定保守区域(位于 NS 基因上)进行引物和探针设计。所选区域与 MDPV 有明显差异。通过一系列优化实验,检测限为 50.2 拷贝/μl。该检测方法对 cGPV 和 N-GPV 的检测具有高度特异性,与大肠杆菌、P.M.、R.A.、S.S.、MDPV、N-MDPV、DAdV-A、DEV、GHPV、DHAV-1、DHAV-3、ATmV、AIV、MDRV 和 N-DRV 无交叉反应。该检测方法具有良好的重复性,内、间试验变异系数均小于 2.37%。结合宿主特异性,建立的 TaqMan qPCR 可用于 cGPV 和 N-GPV 的鉴别诊断。检测到雏鹅和雏麝香鸭中 cGPV 的频率为 12%至 44%,而骡鸭和樱桃谷鸭中 N-GPV 的频率为 36%至 56%。此外,在骡鸭胚胎和刚孵化的骡鸭中可检测到荧光阳性信号。这些发现为 N-GPV 从种骡鸭垂直传播到雏鸭提供了证据。

结论

我们建立了一种用于 cGPV 和 N-GPV DNA 流行病学调查和发病机制研究的定量平台,该平台具有高度的敏感性、特异性和重复性。根据宿主特异性可区分 N-GPV 和 cGPV 感染。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e99c/6823957/b1a843b7e178/12917_2019_2090_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e99c/6823957/9d78ebf2d763/12917_2019_2090_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e99c/6823957/163a62891239/12917_2019_2090_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e99c/6823957/b1a843b7e178/12917_2019_2090_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e99c/6823957/9d78ebf2d763/12917_2019_2090_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e99c/6823957/163a62891239/12917_2019_2090_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e99c/6823957/b1a843b7e178/12917_2019_2090_Fig3_HTML.jpg

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