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不同系统发育群体的[FeFe]-氢化酶中普遍存在的氢催化机制的指征。

Indications for a universal hydrogen catalysis mechanism in [FeFe]-hydrogenases of different phylogenetic groups.

作者信息

Senger Moritz, Schumann Conrad, Cabotaje Princess R, Zamader Afridi, Huang Ping, Land Henrik, Berggren Gustav

机构信息

Department of Chemistry - Ångström Laboratory, Molecular Biomimetics, Uppsala University, 75120 Uppsala, Sweden.

Department of Chemistry - BMC, Biochemistry, Uppsala University, 75120 Uppsala, Sweden.

出版信息

Phys Chem Chem Phys. 2025 May 8;27(18):9864-9875. doi: 10.1039/d5cp00412h.

Abstract

[FeFe]-hydrogenases are metalloenzymes catalysing bidirectional hydrogen (H) turnover. These enzymes are generally considered to be extremely efficient and fast catalysts. However, [FeFe]-hydrogenases constitute a very diverse enzyme family that can be divided into several distinct phylogenetic groups, denoted as groups A-G. Very little is known about the properties of [FeFe]-hydrogenases outside of the intensively studied group A, but recent studies on putatively sensory group C and D enzymes have revealed distinct differences in reactivity. The variation in structure, reactivity and physiological function observed between phylogenetic groups raises the question if all [FeFe]-hydrogenases follow the same mechanism for H turnover. Here, we provide the first detailed spectroscopic investigation of a slow-acting putatively sensory group D [FeFe]-hydrogenase from (HydS). Photo-reduction enabled us to characterize redox states in group D [FeFe]-hydrogenase infrared spectroscopy under catalytic conditions. The sequential population of redox states similar to group A [FeFe]-hydrogenases supports the notion that group A and D [FeFe]-hydrogenases follow a universal catalytic mechanism. However, clear differences between enzymes from different phylogenetic groups become evident when comparing the relative stability and protonation state of suggested key catalytic intermediates. Moreover, the spectroscopic data collected on HydS provides new insight into the structure of the reduced active site, lending further support for the notion of a retained bridging CO ligand throughout the entire catalytic cycle.

摘要

[铁铁]氢化酶是催化双向氢(H)转化的金属酶。这些酶通常被认为是极其高效和快速的催化剂。然而,[铁铁]氢化酶构成了一个非常多样化的酶家族,可分为几个不同的系统发育组,称为A - G组。除了深入研究的A组之外,对于[铁铁]氢化酶的性质了解甚少,但最近对推测为传感型的C组和D组酶的研究揭示了反应性的明显差异。系统发育组之间观察到的结构、反应性和生理功能的变化提出了一个问题,即是否所有[铁铁]氢化酶都遵循相同的氢转化机制。在这里,我们首次对来自[具体来源未给出]的一种作用缓慢的推测为传感型D组[铁铁]氢化酶(HydS)进行了详细的光谱研究。光还原使我们能够在催化条件下通过红外光谱表征D组[铁铁]氢化酶中的氧化还原状态。与A组[铁铁]氢化酶相似的氧化还原状态的顺序出现支持了A组和D组[铁铁]氢化酶遵循通用催化机制的观点。然而,当比较建议的关键催化中间体的相对稳定性和质子化状态时,不同系统发育组的酶之间的明显差异变得明显。此外,在HydS上收集的光谱数据为还原活性位点的结构提供了新的见解,进一步支持了在整个催化循环中保留桥连CO配体的观点。

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