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通过功能获得性研究探究蛋白质支架对H簇反应活性的影响——通过[FeFe]氢化酶的合理设计改善H进化和O耐受性

Probing the Influence of the Protein Scaffold on H-Cluster Reactivity via Gain-of-Function Studies─Improved H Evolution and O Tolerance through Rational Design of [FeFe] Hydrogenase.

作者信息

Cabotaje Princess R, Sekretareva Alina, Senger Moritz, Huang Ping, Walter Kaija, Redman Holly J, Croy Nicholas, Stripp Sven T, Land Henrik, Berggren Gustav

机构信息

Molecular Biomimetics, Department of Chemistry, Ångström Laboratory, Uppsala University, P.O. Box 523, Uppsala SE-75120, Sweden.

Biochemistry, Department of Chemistry, Biomedical Centre, Uppsala University, Uppsala SE-75120, Sweden.

出版信息

J Am Chem Soc. 2025 Feb 5;147(5):4654-4666. doi: 10.1021/jacs.4c17364. Epub 2025 Jan 27.

DOI:10.1021/jacs.4c17364
PMID:39868705
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11803613/
Abstract

[FeFe] hydrogenases make up a structurally diverse family of metalloenzymes that catalyze proton/dihydrogen interconversion. They can be classified into phylogenetically distinct groups denoted A-G, which differ in structure and reactivity. Prototypical Group A hydrogenases have high turnover rates and remarkable energy efficiency. As compared to Group A enzymes, the putatively sensory Group D hydrogenase from (HydS) has a thousand-fold lower H evolution rate and a high overpotential requirement to drive catalysis (irreversible) but shows increased inhibitor tolerance. This divergence in structure and activity between hydrogenases makes them ideal models for studying second (active-site environment) and outer (, substrate transport) coordination sphere effects on metal cofactors. Herein, we generated three HydS-based variants, each mimicking proposed key structural features of Group A hydrogenase: the "active site" (), "proton-transfer pathway" (), and "combined" ( = + ) variant. A fourth single-point variant, , which introduces a proposed critical cysteine in the active site, was characterized as a reference. No change in isolation resulted in Group A-like behavior; ., no positive impact on catalytic performance was observed. The variant, however, showed increased H evolution activity but retained the overpotential requirement. Additionally, the variant improved the already relatively high stability of HydS against O and CO inhibition. These findings show that activity rates, (ir)reversibility, and susceptibility to gaseous inhibitors are decoupled. Moreover, the results highlight the importance of exploring hydrogenase diversity as a path toward understanding the structural factors that enable the outstanding catalytic properties of [FeFe] hydrogenases.

摘要

[铁铁]氢化酶构成了一类结构多样的金属酶家族,可催化质子/氢气的相互转化。它们可分为系统发育上不同的A - G组,这些组在结构和反应性上存在差异。典型的A组氢化酶具有高周转率和显著的能量效率。与A组酶相比,来自[具体来源未提及]的假定具有传感功能的D组氢化酶(HydS)的析氢速率低一千倍,驱动催化(不可逆)所需的过电位高,但对抑制剂的耐受性增强。氢化酶之间结构和活性的这种差异使其成为研究第二(活性位点环境)和外部(底物运输)配位层对金属辅因子影响的理想模型。在此,我们构建了三种基于HydS的变体,每种变体模拟A组氢化酶提出的关键结构特征:“活性位点”([具体名称未提及])、“质子转移途径”([具体名称未提及])和“组合”([具体名称未提及]=[活性位点名称]+[质子转移途径名称])变体。第四个单点变体[具体名称未提及],在活性位点引入了一个假定的关键半胱氨酸,作为参考进行了表征。单独的[该变体名称]没有导致类似A组的行为;即,未观察到对催化性能的积极影响。然而,[组合变体名称]显示出析氢活性增加,但保留了对过电位的要求。此外,[质子转移途径变体名称]提高了HydS对氧气和一氧化碳抑制本就相对较高的稳定性。这些发现表明活性速率、(不)可逆性和气态抑制剂敏感性是解耦的。此外,结果突出了探索氢化酶多样性作为理解使[铁铁]氢化酶具有卓越催化性能的结构因素的途径的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/185c30186047/ja4c17364_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/0609f3bbd342/ja4c17364_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/95a21364ac9d/ja4c17364_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/b7072363ba81/ja4c17364_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/5d2948e0179d/ja4c17364_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/ba013dde362e/ja4c17364_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/185c30186047/ja4c17364_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/0609f3bbd342/ja4c17364_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/95a21364ac9d/ja4c17364_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/b7072363ba81/ja4c17364_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/5d2948e0179d/ja4c17364_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/ba013dde362e/ja4c17364_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f979/11803613/185c30186047/ja4c17364_0006.jpg

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本文引用的文献

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Secondary structure changes as the potential H sensing mechanism of group D [FeFe]-hydrogenases.作为 D 组 [FeFe]-氢化酶潜在 H 感测机制的二级结构变化。
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