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揭示吸附在石墨烯表面的甲醇团簇的聚集性质。分子动力学模拟的见解。

Unraveling the conglomeratic nature of methanol clusters adsorbed on graphene surfaces. Insights from molecular dynamics simulations.

作者信息

García de la Concepción Juan, Jiménez-Serra Izaskun, Alkorta Ibon, Elguero José, Cintas Pedro

机构信息

Departamento de Química Orgánica e Inorgánica, Facultad de Ciencias, and IACYS-Green Chemistry and Sustainable Development Unit, Universidad de Extremadura Badajoz 06006 Spain

Departamento de Astrofísica, Centro de Astrobiología (CSIC-INTA), Carretera de Torrejón-Ajalvir Km 4, Torrejón de Ardoz Madrid 28850 Spain.

出版信息

RSC Adv. 2025 Apr 25;15(16):12246-12254. doi: 10.1039/d5ra02122g. eCollection 2025 Apr 16.

DOI:10.1039/d5ra02122g
PMID:40292346
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12023738/
Abstract

The expression of chirality in adsorption phenomena constitutes an important topic, not only relevant to asymmetric transformations involving solid surfaces, but also to the emergence of homochirality in both terrestrial and extraterrestrial scenarios. Methanol (MeOH) aggregation on graphite/graphene, one of the most idealized adsorbate-adsorbent systems, leads to islands of cyclic clusters of different sizes (, 2016, , 3142-3147). Here, we show that this aggregation occurs enantioselectively affording 2D conglomerates depending on the size of clusters, in close analogy to a Pasteurian racemate. Homochiral sequences are held together by hydrogen bonding and other non-covalent interactions, whose absolute configurations can be appropriately specified. A discussion involving the dichotomy between 2D racemates and conglomerates, is offered as well. In addition, the present simulations showcase a broad range of acyclic and cyclic structures, even if some discrete rings are the dominant species, in agreement with previous experimental data and theoretical modeling. Our results indicate that MeOH clusters show binding energies close to the experimental values, remaining intact at temperatures as high as 120 K and up to 150 K.

摘要

手性在吸附现象中的表达是一个重要的课题,不仅与涉及固体表面的不对称转化有关,而且与地球和外星环境中同手性的出现有关。甲醇(MeOH)在石墨/石墨烯上的聚集,这是最理想化的吸附质 - 吸附剂体系之一,会形成不同大小的环状簇岛(,2016,,3142 - 3147)。在这里,我们表明这种聚集以对映选择性的方式发生,根据簇的大小形成二维聚集体,这与巴斯德外消旋体非常相似。同手性序列通过氢键和其他非共价相互作用结合在一起,其绝对构型可以适当确定。此外,还讨论了二维外消旋体和聚集体之间的二分法。此外,本模拟展示了广泛的非环状和环状结构,即使一些离散环是主要物种,这与先前的实验数据和理论建模一致。我们的结果表明,MeOH簇的结合能接近实验值,在高达120 K甚至150 K的温度下仍保持完整。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/8aee3325e793/d5ra02122g-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/a89b2268eac3/d5ra02122g-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/b8df6bc30f98/d5ra02122g-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/8c98002b9c64/d5ra02122g-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/d3d88ee80bea/d5ra02122g-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/8aee3325e793/d5ra02122g-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/a89b2268eac3/d5ra02122g-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/b8df6bc30f98/d5ra02122g-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/8c98002b9c64/d5ra02122g-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/d3d88ee80bea/d5ra02122g-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e8a/12023738/8aee3325e793/d5ra02122g-f5.jpg

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本文引用的文献

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Automated Molecular Cluster Growing for Explicit Solvation by Efficient Force Field and Tight Binding Methods.通过高效力场和紧密结合方法实现显式溶剂化的自动分子簇生长
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Robust Atomistic Modeling of Materials, Organometallic, and Biochemical Systems.
材料、有机金属和生化系统的强大原子建模。
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GFN2-xTB-An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions.GFN2-xTB 一种精确且广泛参数化的自洽紧束缚量子化学方法,具有多极静电和密度相关色散贡献。
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prediction of the polymorph phase diagram for crystalline methanol.结晶甲醇多晶型相图的预测
Chem Sci. 2018 Apr 16;9(20):4622-4629. doi: 10.1039/c8sc01237g. eCollection 2018 May 28.
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Enantiomer surface chemistry: conglomerate versus racemate formation on surfaces.对映异构体表面化学:表面上的聚集态与外消旋体的形成。
Chem Soc Rev. 2017 Dec 11;46(24):7787-7839. doi: 10.1039/c7cs00555e.
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Chirality in adsorption on solid surfaces.手性在固体表面吸附中的作用。
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Strings-to-Rings Transition and Antiparallel Dipole Alignment in Two-Dimensional Methanols.二维甲醇中的字符串到环的转变和反平行偶极子排列。
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