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糖尿病视网膜病变和肝癌的靶点筛选与单细胞分析

Target Screening and Single Cell Analysis of Diabetic Retinopathy and Hepatocarcinoma.

作者信息

Shao Yinan, Duan Bingfen, Li Haotian, Li Xiaonan, Peng Shijing, Zheng Haowen, You Zhipeng

机构信息

School of Optometry, Jiangxi Medical College, Nanchang University, Nanchang, China.

Jiangxi Provincial Institute of Ophthalmology and Vision Science, Nanchang, China.

出版信息

J Cell Mol Med. 2025 May;29(9):e70521. doi: 10.1111/jcmm.70521.

Abstract

The association between liver cancer and diabetes has been a longstanding focus in medical research. Current evidence suggests that diabetes is an independent risk factor for the development of liver cancer. Diabetic retinopathy (DR), a prevalent neurovascular complication of diabetes, has yet to be fully characterised concerning liver cancer. Therefore, this study seeks to identify shared genes and pathways between liver cancer and DR to uncover potential therapeutic targets. Immune infiltration and cell communication in liver cancer were analysed using the GEO single-cell dataset GSM7494113. Single-cell RNA sequencing data from rat retinas were obtained from the GEO datasets GSE209872 and GSE160306. Ferritin phagocytosis-related genes were retrieved from the GeneCards database. The SeuratR package was employed for single-cell clustering analysis, while the CellChat package assessed differences in intercellular communication. Genes shared between DR and liver cancer were identified, and the DGIDB database was consulted to predict potential drug-gene interactions targeting membrane proteins involved in ferritin phagocytosis. Key ferritin phagocytosis (FRHG) genes were further validated using quantitative real-time polymerase chain reaction (qRT-PCR). After annotating the single-cell data through dimensionality reduction and clustering, the expression of genes associated with membrane protein-related ferritinophagy was notably elevated in both HCC and DR samples. Based on the expression of ferritinophagy-related genes, the ferritin deposition score in Müller cells from the DR group was significantly higher than that in the control group. Cell communication analysis revealed that central hub genes associated with ferritinophagy, such as PSAP and MK, along with other signalling pathways, were significantly upregulated in the high Müller group compared to the low Müller group. In contrast, VEGF expression was enhanced in the low Müller group. Importantly, the machine learning model constructed using these key hub genes demonstrated high diagnostic efficacy for both HCC and DR. Finally, by simulating a hyperosmotic diabetic microenvironment, we confirmed in vitro that high glucose conditions significantly stimulate the expression of the shared key hub genes in both HCC and DR. The present study identified the connection between ferritinophagy-related subgroups of cells and key hub genes in both HCC and DR, providing new insights into DR-associated biomarkers and the shared pathological regulatory pathways with HCC. These findings further suggest potential therapeutic targets for both diseases.

摘要

肝癌与糖尿病之间的关联一直是医学研究的长期焦点。目前的证据表明,糖尿病是肝癌发生的独立危险因素。糖尿病视网膜病变(DR)是糖尿病常见的神经血管并发症,在肝癌方面尚未得到充分的特征描述。因此,本研究旨在确定肝癌与DR之间的共享基因和通路,以发现潜在的治疗靶点。使用GEO单细胞数据集GSM7494113分析肝癌中的免疫浸润和细胞通讯。大鼠视网膜的单细胞RNA测序数据来自GEO数据集GSE209872和GSE160306。从GeneCards数据库中检索铁蛋白吞噬相关基因。使用SeuratR包进行单细胞聚类分析,而CellChat包评估细胞间通讯的差异。确定了DR和肝癌之间共享的基因,并查阅DGIDB数据库以预测针对参与铁蛋白吞噬的膜蛋白的潜在药物-基因相互作用。使用定量实时聚合酶链反应(qRT-PCR)进一步验证关键的铁蛋白吞噬(FRHG)基因。通过降维和聚类对单细胞数据进行注释后,与膜蛋白相关的铁蛋白自噬相关基因的表达在肝癌和DR样本中均显著升高。基于铁蛋白自噬相关基因的表达,DR组Müller细胞中的铁蛋白沉积评分显著高于对照组。细胞通讯分析显示,与铁蛋白自噬相关的中心枢纽基因,如PSAP和MK,以及其他信号通路,在高Müller组中比低Müller组显著上调。相比之下,低Müller组中VEGF表达增强。重要的是,使用这些关键枢纽基因构建的机器学习模型对肝癌和DR均显示出高诊断效能。最后,通过模拟高渗糖尿病微环境,我们在体外证实高糖条件显著刺激肝癌和DR中共享的关键枢纽基因的表达。本研究确定了肝癌和DR中细胞铁蛋白自噬相关亚群与关键枢纽基因之间的联系,为DR相关生物标志物以及与肝癌共享的病理调节通路提供了新见解。这些发现进一步提示了这两种疾病的潜在治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/523a/12128161/4999a385828d/JCMM-29-e70521-g012.jpg

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