Henriques Lethícia R, Botelho Bruna B F, Carlson Roger M, Carvalho João Victor R P, Oliveira Ellen G, Agarkova Irina V, Van Etten James L, Dunigan David D, Rodrigues Rodrigo A L
Laboratório de Vírus, Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil.
Núcleo de Apoio Técnico ao Ensino, Pesquisa e Extensão, Instituto de Ciências Ambientais, Químicas e Farmacêuticas, Universidade Federal de São Paulo, Diadema, SP, Brasil.
Npj Viruses. 2025 Feb 22;3(1):12. doi: 10.1038/s44298-025-00088-y.
A new level of viral complexity has emerged from the isolation of green algae-infecting chloroviruses from diverse aquatic environments around the world over the past few decades. This study focuses on describing and comparing the genomic features of gammachloroviruses, previously referred to as SAG-viruses. We present 24 novel isolates capable of forming plaques on lawns of Chlorella heliozoae SAG 3.83, including the first giant virus isolated from Greenland. Together with 13 previous isolates, these new viruses form a robust dataset that we used to investigate the genomic landscape and to test whether environmental conditions influence the species diversity of gammachloroviruses. Genome sizes range from 283 kbp to 385 kbp, with one new isolate having the smallest genome found in the genus Chlorovirus. Based on phylogenomics and global genome identity analysis, we defined 10 species of "Gammachlorovirus", half of which are represented by a single isolate. We observed a high level of genome synteny, and the tRNA islets maintain a distinct interspecific pattern, although some notable variations are evident. Our analysis reveals an open pan-genome composed of 681 COGs, more than 30% of which consist of uncharacterized genes, highlighting significant innovative genetic potential for these viruses. Our results suggest that the subgenus "Gammachlorovirus" exhibits the greatest genetic diversity among chloroviruses, with variability that is independent of geographic location. Overall, these findings underscore the considerable diversity within these ten newly defined species and the importance of isolating and characterizing chloroviruses from new locations worldwide to enhance our understanding of the ecology and evolution of this group of giant algal viruses.
在过去几十年里,从世界各地不同的水生环境中分离出感染绿藻的氯病毒,这揭示了病毒复杂性的一个新层面。本研究着重描述和比较γ-氯病毒(以前称为SAG病毒)的基因组特征。我们展示了24种能够在太阳虫小球藻SAG 3.83菌苔上形成噬菌斑的新型分离株,包括从格陵兰岛分离出的首例巨型病毒。连同之前的13种分离株,这些新病毒形成了一个强大的数据集,我们用它来研究基因组格局,并测试环境条件是否会影响γ-氯病毒的物种多样性。基因组大小从283千碱基对到385千碱基对不等,有一种新分离株拥有氯病毒属中发现的最小基因组。基于系统基因组学和全基因组同一性分析,我们定义了10种“γ-氯病毒”,其中一半仅由单个分离株代表。我们观察到高度的基因组共线性,尽管有一些明显的变异,但tRNA小岛保持着独特的种间模式。我们的分析揭示了一个由681个直系同源基因簇组成的开放泛基因组,其中超过30%由未表征的基因组成,突出了这些病毒巨大的创新遗传潜力。我们的结果表明,“γ-氯病毒”亚属在氯病毒中表现出最大的遗传多样性,其变异性与地理位置无关。总体而言,这些发现强调了这十个新定义物种内的显著多样性,以及从全球新地点分离和鉴定氯病毒对于增进我们对这组巨型藻类病毒的生态学和进化理解的重要性。