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某全球计算机模拟分析:抗菌药物耐药性和生物膜产生基因在基因组序列中的分布

Distribution of Antimicrobial Resistance and Biofilm Production Genes in the Genomic Sequences of : A Global In Silico Analysis.

作者信息

Silva-de-Jesus Ana Carolina, Ferrari Rafaela G, Panzenhagen Pedro, Dos Santos Anamaria M P, Portes Ana Beatriz, Conte-Junior Carlos Adam

机构信息

Center for Food Analysis (NAL), Technological Development Support Laboratory (LADETEC), Federal University of Rio de Janeiro (UFRJ), Cidade Universitária, Rio de Janeiro 21941-853, Brazil.

Laboratory of Advanced Analysis in Biochemistry and Molecular Biology (LAABBM), Department of Biochemistry, Federal University of Rio de Janeiro (UFRJ), Cidade Universitária, Rio de Janeiro 21941-853, Brazil.

出版信息

Antibiotics (Basel). 2025 Apr 1;14(4):364. doi: 10.3390/antibiotics14040364.

Abstract

constitutes a significant public health threat due to its exceptional adaptability, antimicrobial resistance (AMR), and capacity to form biofilms, all of which facilitate its persistence in clinical and environmental settings. This study undertook an extensive in silico analysis of 44,069 genomic sequences acquired from the NCBI database to assess the global distribution of biofilm-associated and resistance-associated genes. The genomes were categorized into human clinical and environmental groups, with clinical samples representing a predominant 96%. The analysis revealed notable regional discrepancies in sequencing efforts, with Europe and North America contributing 76% of the genomes. Key findings include the high prevalence of the locus, which is associated with biofilm formation, and its robust correlation with other genes, such as , which was exclusively linked to SCC type IIa. The AMR gene analysis revealed substantial genetic diversity within environmental samples, with genes like vga(E) and erm being identified as particularly prominent. The clonal complex analysis revealed ST8 (USA300) and ST5 as the predominant types in human clinical isolates, while ST398 and ST59 were most frequently observed in environmental isolates. SCC type IV was globally prevalent, with subtype Iva being strongly associated with ST8 in North America and subtype IVh with ST239 in Europe. These findings underscore the dynamic evolution of via mobile genetic elements and highlight the necessity for standardized metadata in public genomic databases to improve surveillance efforts. Furthermore, they reinforce the critical need for a One Health approach in monitoring evolution, particularly concerning the co-dissemination of biofilm and resistance genes across various ecological niches.

摘要

由于其卓越的适应性、抗菌耐药性(AMR)以及形成生物膜的能力,它构成了重大的公共卫生威胁,所有这些特性都有助于其在临床和环境中持续存在。本研究对从NCBI数据库获取的44069个基因组序列进行了广泛的计算机分析,以评估生物膜相关基因和耐药相关基因的全球分布情况。这些基因组被分为人类临床组和环境组,其中临床样本占主要的96%。分析揭示了测序工作中显著的区域差异,欧洲和北美贡献了76%的基因组。主要发现包括与生物膜形成相关的基因座的高流行率,以及它与其他基因(如仅与IIa型SCC相关的基因)的强相关性。AMR基因分析揭示了环境样本中大量的遗传多样性,vga(E)和erm等基因被确定为特别突出。克隆复合体分析显示,ST8(USA300)和ST5是人类临床分离株中的主要类型,而ST398和ST59在环境分离株中最常被观察到。IV型SCC在全球普遍存在,Iva亚型在北美与ST8密切相关,IVh亚型在欧洲与ST239密切相关。这些发现强调了通过移动遗传元件的动态进化,并突出了公共基因组数据库中标准化元数据对于加强监测工作的必要性。此外,它们强化了在监测进化过程中采取“同一健康”方法的迫切需求,特别是关于生物膜和耐药基因在不同生态位中的共同传播。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eb01/12024283/139dcf5e7433/antibiotics-14-00364-g001.jpg

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