Zhang Hui, Ji Yanan, Yi Zhongquan, Zhao Jing, Liu Jianping, Zhang Xianxian
Department of Central Laboratory, Affiliated Hospital 6 of Nantong University, Yancheng Third People's Hospital, Yancheng, 224000, People's Republic of China.
Department of Neurology, Affiliated Hospital 6 of Nantong University, Yancheng Third People's Hospital, Yancheng, 224000, People's Republic of China.
J Mol Neurosci. 2025 Apr 29;75(2):60. doi: 10.1007/s12031-025-02352-5.
Ischemic stroke (IS) constitutes a severe neurological disorder with restricted treatment alternatives. Recent investigations have disclosed that glycosylation is closely associated with the occurrence and outcome of IS. Nevertheless, data on the transcriptomic dynamics of glycosylation in IS are lacking. The objective of this study was to undertake a comprehensive exploration of glycosylation-related genes (GRGs) in IS via bioinformatics and to assess their immune characteristics. In this study, through the intersection of genes from weighted gene co-expression network analysis, GRGs from five glycosylation pathways, and DEGs from differential expression analysis, 20 candidate GRGs were identified. Subsequently, through LASSO, Random Forest, and SVM-RFE, 3 hub GRGs (F5, PPP6C, and UBE2J1) were identified. Additional, a gene diagnostic model linked to glycosylation was developed and validated. The findings indicated that the diagnostic model could effectively distinguish between IS patients and healthy individuals in the training, validation, and merging datasets, indicating clinical relevance. Subsequently, by employing unsupervised clustering analysis, IS patients were classified into three clusters, and significant disparities were witnessed in immune cell infiltration among distinct clusters. In summary, this study successfully identified hub GRGs in IS and investigated the roles of these hub genes in the immune microenvironment, indicating potential clinical applications for IS.
缺血性中风(IS)是一种严重的神经系统疾病,治疗选择有限。最近的研究表明,糖基化与IS的发生和预后密切相关。然而,关于IS中糖基化的转录组动力学数据尚缺。本研究的目的是通过生物信息学全面探索IS中与糖基化相关的基因(GRGs),并评估其免疫特征。在本研究中,通过加权基因共表达网络分析的基因、五条糖基化途径的GRGs以及差异表达分析的差异表达基因(DEGs)的交集,确定了20个候选GRGs。随后,通过LASSO、随机森林和支持向量机递归特征消除(SVM-RFE),确定了3个核心GRGs(F5、PPP6C和UBE2J1)。此外,还开发并验证了一个与糖基化相关的基因诊断模型。研究结果表明,该诊断模型在训练、验证和合并数据集中能够有效区分IS患者和健康个体,具有临床相关性。随后,通过无监督聚类分析,将IS患者分为三个簇,不同簇之间的免疫细胞浸润存在显著差异。总之,本研究成功鉴定了IS中的核心GRGs,并研究了这些核心基因在免疫微环境中的作用,表明其在IS中具有潜在的临床应用价值。