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帕金森病中LRRK2每个结构域的罕见变异基因负担:关联仅限于激酶结构域。

LRRK2 rare-variant per-domain genetic burden in Parkinson's Disease: association confined to the kinase domain.

作者信息

Parlar Sitki Cem, Senkevich Konstantin, Yu Eric, Ruskey Jennifer A, Ahmad Jamil, Asayesh Farnaz, Spiegelman Dan, Waters Cheryl, Monchi Oury, Dauvilliers Yves, Dupré Nicolas, Greenbaum Lior, Hassin-Baer Sharon, Miliukhina Irina, Timofeeva Alla, Emelyanov Anton, Pchelina Sofya, Alcalay Roy N, Fon Edward A, Trempe Jean-François, Gan-Or Ziv

机构信息

Department of Human Genetics, McGill University, Montréal, QC, Canada.

The Neuro (Montreal Neurological Institute-Hospital), McGill University, Montréal, QC, Canada.

出版信息

NPJ Parkinsons Dis. 2025 Apr 29;11(1):102. doi: 10.1038/s41531-025-00934-z.

DOI:10.1038/s41531-025-00934-z
PMID:40301370
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12041573/
Abstract

LRRK2 variants are key genetic risk factors for Parkinson's Disease (PD). We conducted a per-domain rare coding variant burden analysis, including 8,888 PD cases and 69,412 controls. In meta-analysis, the Kinase domain was strongly associated with PD (Exonic: P = 1.61 × 10, Non-synonymous: P = 1.54 × 10, CADD > 20: P = 3.09 × 10). Excluding the p.G2019S variant nullified this effect. Nominal associations were found in the ANK and Roc-COR domains, with potentially protective variants, p.R793M and p.Q1353K.

摘要

亮氨酸重复激酶2(LRRK2)变异是帕金森病(PD)的关键遗传风险因素。我们进行了一项按结构域的罕见编码变异负担分析,纳入了8888例PD病例和69412例对照。在荟萃分析中,激酶结构域与PD密切相关(外显子:P = 1.61×10,非同义:P = 1.54×10,综合注释依赖性损耗(CADD)>20:P = 3.09×10)。排除p.G2019S变异消除了这种效应。在ANK和Roc-COR结构域中发现了名义上的关联,存在潜在的保护性变异p.R793M和p.Q1353K。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28f8/12041573/dc44c4ff3e14/41531_2025_934_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28f8/12041573/dc44c4ff3e14/41531_2025_934_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28f8/12041573/dc44c4ff3e14/41531_2025_934_Fig1_HTML.jpg

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本文引用的文献

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Systematic rare variant analyses identify RAB32 as a susceptibility gene for familial Parkinson's disease.系统罕见变异分析确定 RAB32 为家族性帕金森病的易感基因。
Nat Genet. 2024 Jul;56(7):1371-1376. doi: 10.1038/s41588-024-01787-7. Epub 2024 Jun 10.
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Rab29-dependent asymmetrical activation of leucine-rich repeat kinase 2.Rab29 依赖性富亮氨酸重复激酶 2 的不对称激活
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LRRK2 Inhibition by BIIB122 in Healthy Participants and Patients with Parkinson's Disease.BIIB122对健康参与者和帕金森病患者中LRRK2的抑制作用。
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Impact of 100 LRRK2 variants linked to Parkinson's disease on kinase activity and microtubule binding.帕金森病相关的 100 个 LRRK2 变异对激酶活性和微管结合的影响。
Biochem J. 2022 Sep 16;479(17):1759-1783. doi: 10.1042/BCJ20220161.
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Prevalence of ten LRRK2 variants in Parkinson's disease: A comprehensive review.LRRK2 变异体在帕金森病中的流行情况:全面综述。
Parkinsonism Relat Disord. 2022 May;98:103-113. doi: 10.1016/j.parkreldis.2022.05.012. Epub 2022 May 25.
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Variant interpretation using population databases: Lessons from gnomAD.使用人群数据库进行变异解释:来自 gnomAD 的经验。
Hum Mutat. 2022 Aug;43(8):1012-1030. doi: 10.1002/humu.24309. Epub 2021 Dec 16.