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解析生物膜细胞外DNA(eDNA)在细菌生理学、生物膜形成和基质组结构中的多方面作用。

Unraveling the multifaceted role of extracellular DNA (eDNA) of biofilm in bacterial physiology, biofilm formation, and matrixome architecture.

作者信息

Rath Sonalin, Fatma Shourat, Das Surajit

机构信息

Laboratory of Environmental Microbiology and Ecology, Department of Life Science, National Institute of Technology, Odisha, India.

出版信息

Crit Rev Biochem Mol Biol. 2025 May 5:1-32. doi: 10.1080/10409238.2025.2497270.

Abstract

Bacterial biofilms consist of bacterial communities embedded in a self-produced extracellular matrix (EM) known as the matrixome. The matrixome primarily comprises extracellular polymeric substances (EPS) and other elements. EPS encompassing exopolysaccharides, proteins, lipids, and nucleic acids plays a key role in maintaining structural integrity and is involved in various functions. Extracellular DNA (eDNA) released into the EM through various mechanisms, including cell lysis or autolysis, membrane vesicle-mediated release, phage-mediated release, active secretion, and Type VI secretion system (T6SS)-mediated eDNA release. Quorum sensing (QS), a vital signaling system during biofilm formation, also regulates the release of eDNA in a controlled manner by coordinating gene expression in response to cell density. Once released into the EM, eDNA interacts with EPS components, enhancing matrix stability, structural cohesion, and integrity. The present review comprehends the multifaceted roles of eDNA within the biofilm matrixome, highlighting its contribution to biofilm formation, stability, and functionality through various interactions and regulatory mechanisms. It also delves into the mechanisms of eDNA release and its interactions within the biofilm matrix. Understanding these complex roles of eDNA in regulating biofilm will provide insights into developing strategies to enhance the remediation of environmental pollutants and manage biofilm-associated problems in medical settings.

摘要

细菌生物膜由嵌入称为基质组的自我产生的细胞外基质(EM)中的细菌群落组成。基质组主要由细胞外聚合物(EPS)和其他成分组成。包含胞外多糖、蛋白质、脂质和核酸的EPS在维持结构完整性方面起关键作用,并参与各种功能。细胞外DNA(eDNA)通过多种机制释放到EM中,包括细胞裂解或自溶、膜泡介导的释放、噬菌体介导的释放、主动分泌以及VI型分泌系统(T6SS)介导的eDNA释放。群体感应(QS)是生物膜形成过程中的一个重要信号系统,它还通过响应细胞密度协调基因表达,以可控的方式调节eDNA的释放。一旦释放到EM中,eDNA就会与EPS成分相互作用,增强基质稳定性、结构凝聚力和完整性。本综述阐述了eDNA在生物膜基质组中的多方面作用,强调了其通过各种相互作用和调节机制对生物膜形成、稳定性和功能的贡献。它还深入探讨了eDNA释放的机制及其在生物膜基质中的相互作用。了解eDNA在调节生物膜中的这些复杂作用,将为制定加强环境污染物修复和管理医疗环境中与生物膜相关问题的策略提供见解。

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