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我们了解得越多,情况就越多样:磷酸果糖激酶超家族的结构、功能与进化。

The more we learn, the more diverse it gets: structures, functions and evolution in the Phosphofructokinase Superfamily.

作者信息

Compton Jordan A, Patrick Wayne M

机构信息

School of Biological Sciences, Victoria University of Wellington, PO Box 600, Wellington 6140, New Zealand.

出版信息

Biochem J. 2025 May 6;482(9):467-483. doi: 10.1042/BCJ20253024.

Abstract

The enzyme 6-phosphofructokinase (PFK) phosphorylates d-fructose 6-phosphate, producing d-fructose 1,6-bisphosphate. The canonical version-discovered almost 90 years ago-is ATP-dependent, allosterically regulated and catalyses the first committed step in glycolysis. However, beyond this textbook enzyme, there is fascinating functional and structural variety among PFKs across the tree of life. While PFKs are found in two non-homologous superfamilies, here, we review the universally distributed enzymes in one, the Phosphofructokinase Superfamily. We focus on summarising the diversity within this superfamily. A key partition regards the identity of the phosphate donor, which can be ATP or inorganic pyrophosphate (PPi). Considerable insights into functional and evolutionary aspects of the ATP- and PPi-dependent PFKs have come through structural biology, with 45 structures now available in the Protein Data Bank. One recent highlight was the use of cryoEM and molecular dynamics simulations to illuminate the structural basis of allosteric regulation in human liver PFK. Others were to explore interactions of drug-like small molecules with the PFKs from Trypanosoma brucei and human liver, revealing new routes to antibiotics and immune modulators, respectively. In contrast with the ATP-dependent enzymes, PPi-dependent PFKs are typically non-allosteric and catalyse a readily reversible reaction. Some also play an additional physiological role by phosphorylating d-sedoheptulose 7-phosphate. We discuss why these properties are plausibly ancestral. Finally, we also emphasise how much remains to be discovered. For example, the 45 experimentally determined structures are from only 14 species. Nine decades in, it is still a great time to be studying PFK.

摘要

6-磷酸果糖激酶(PFK)可将D-果糖6-磷酸磷酸化,生成D-果糖1,6-二磷酸。大约90年前发现的经典版本依赖ATP,受到别构调节,并催化糖酵解的第一个关键步骤。然而,除了这种教科书式的酶之外,生命之树上的PFK在功能和结构上存在着引人入胜的多样性。虽然PFK存在于两个非同源的超家族中,但在这里,我们将回顾其中一个普遍分布的酶家族——磷酸果糖激酶超家族。我们专注于总结这个超家族中的多样性。一个关键的分类涉及磷酸供体的身份,它可以是ATP或无机焦磷酸(PPi)。通过结构生物学,人们对依赖ATP和PPi的PFK的功能和进化方面有了相当深入的了解,目前蛋白质数据库中有45个相关结构。最近的一个亮点是利用冷冻电镜和分子动力学模拟来阐明人肝脏PFK别构调节的结构基础。其他研究则探索了类药物小分子与布氏锥虫和人肝脏PFK的相互作用,分别揭示了抗生素和免疫调节剂的新途径。与依赖ATP的酶不同,依赖PPi的PFK通常是非别构的,催化一个易于逆转的反应。有些还通过将D-景天庚酮糖7-磷酸磷酸化发挥额外的生理作用。我们讨论了为什么这些特性可能是祖先就有的。最后,我们还强调了仍有待发现的内容之多。例如,45个通过实验确定的结构仅来自14个物种。90年过去了,研究PFK仍然是一个绝佳时机。

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