质谱蛋白质组学核心实验室的质量控制:实用入门指南。
Quality Control in the Mass Spectrometry Proteomics Core: A Practical Primer.
作者信息
Neely Benjamin A, Perez-Riverol Yasset, Palmblad Magnus
机构信息
National Institute of Standards and Technology CharlestonSC USA.
European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus HinxtonCambridge United Kingdom.
出版信息
J Biomol Tech. 2024 Sep 12;35(3). doi: 10.7171/3fc1f5fe.42308a9a. eCollection 2024 Sep 30.
The past decade has seen widespread advances in quality control (QC) materials and software tools focused specifically on mass spectrometry-based proteomics, yet the rate of adoption is inconsistent. Despite the fundamental importance of QC, it typically falls behind learning new techniques, instruments, or software. Considering how important QC is in a core setting where data is generated for non-mass spectrometry experts and confidence in delivered results is paramount, we have created this quick-start guide focusing on off-the-shelf QC materials and relatively easy-to-use QC software. We hope that by providing a background on the different levels of QC, different materials and their uses, describing QC design options, and highlighting some current QC software, implementing QC in a core setting will be easier than ever. There continues to be development in each of these areas (such as new materials and software), and the current generation of QC for mass spectrometry-based proteomics is more than capable of conveying confidence in results as well as minimizing laboratory downtime by guiding experimental, technical, and analytical troubleshooting from sample to results.
在过去十年中,质量控制(QC)材料和专门针对基于质谱的蛋白质组学的软件工具取得了广泛进展,但采用率并不一致。尽管质量控制至关重要,但它通常落后于学习新技术、仪器或软件。考虑到质量控制在为非质谱专家生成数据的核心环境中的重要性,以及对交付结果的信心至关重要,我们编写了本快速入门指南,重点介绍现成的质量控制材料和相对易于使用的质量控制软件。我们希望通过提供不同质量控制水平、不同材料及其用途的背景信息,描述质量控制设计选项,并突出一些当前的质量控制软件,在核心环境中实施质量控制将比以往任何时候都更容易。这些领域中的每一个都在不断发展(例如新材料和软件),当前基于质谱的蛋白质组学质量控制不仅能够传达对结果的信心,还能通过指导从样品到结果的实验、技术和分析故障排除,最大限度地减少实验室停机时间。