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改进的图卷积网络在皮质表面分区中的应用。

Application of improved graph convolutional network for cortical surface parcellation.

作者信息

Tan Jia, Ren Xiaomei, Chen Yong, Yuan Xianju, Chang Feiba, Yang Rui, Ma Chengqun, Chen Xiaoyu, Tian Miao, Chen Wei, Wang Zihong

机构信息

Department of Medical Engineering, First Affiliated Hospital of Army Medical University, Chongqing, 40039, China.

Department of Radiology , First Affiliated Hospital of Army Medical University , Chongqing, 400039, China.

出版信息

Sci Rep. 2025 May 12;15(1):16409. doi: 10.1038/s41598-025-00116-0.

DOI:10.1038/s41598-025-00116-0
PMID:40355465
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12069630/
Abstract

Accurate cortical surface parcellation is essential for elucidating brain organizational principles, functional mechanisms, and the neural substrates underlying higher cognitive and emotional processes. However, the cortical surface is a highly folded complex geometry, and large regional variations make the analysis of surface data challenging. Current methods rely on geometric simplification, such as spherical expansion, which takes hours for spherical mapping and registration, a popular but costly process that does not take full advantage of inherent structural information. In this study, we propose an Attention-guided Deep Graph Convolutional network (ADGCN) for end-to-end parcellation on primitive cortical surface manifolds. ADGCN consists of a deep graph convolutional layer with a symmetrical U-shaped structure, which enables it to effectively transmit detailed information of the original brain map and learn the complex graph structure, help the network enhance feature extraction capability. What's more, we introduce the Squeeze and Excitation (SE) module, which enables the network to better capture key features, suppress unimportant features, and significantly improve parcellation performance with a small amount of computation. We evaluated the model on a public dataset of 100 artificially labeled brain surfaces. Compared with other methods, the proposed network achieves Dice coefficient of 88.53% and an accuracy of 90.27%. The network can segment the cortex directly in the original domain, and has the advantages of high efficiency, simple operation and strong interpretability. This approach facilitates the investigation of cortical changes during development, aging, and disease progression, with the potential to enhance the accuracy of neurological disease diagnosis and the objectivity of treatment efficacy evaluation.

摘要

准确的皮质表面分割对于阐明脑组织结构原则、功能机制以及更高层次认知和情感过程的神经基础至关重要。然而,皮质表面是一种高度折叠的复杂几何形状,并且较大的区域差异使得表面数据分析具有挑战性。当前的方法依赖于几何简化,例如球面扩展,这需要数小时进行球面映射和配准,这是一个流行但代价高昂的过程,没有充分利用内在的结构信息。在本研究中,我们提出了一种注意力引导的深度图卷积网络(ADGCN),用于在原始皮质表面流形上进行端到端分割。ADGCN由一个具有对称U形结构的深度图卷积层组成,这使其能够有效地传输原始脑图谱的详细信息并学习复杂的图结构,有助于网络增强特征提取能力。此外,我们引入了挤压与激励(SE)模块,这使网络能够更好地捕捉关键特征,抑制不重要的特征,并通过少量计算显著提高分割性能。我们在一个包含100个人工标记脑表面的公共数据集上评估了该模型。与其他方法相比,所提出的网络实现了88.53%的Dice系数和90.27%的准确率。该网络可以直接在原始域中分割皮质,具有高效、操作简单和可解释性强的优点。这种方法有助于研究发育、衰老和疾病进展过程中的皮质变化,有可能提高神经疾病诊断的准确性和治疗效果评估的客观性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4222/12069630/5d39800ba370/41598_2025_116_Fig8_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4222/12069630/5d39800ba370/41598_2025_116_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4222/12069630/878f0e48a338/41598_2025_116_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4222/12069630/a7221bd9843c/41598_2025_116_Fig2_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4222/12069630/05c8e6678956/41598_2025_116_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4222/12069630/519f648b7181/41598_2025_116_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4222/12069630/5b6fa900c2e8/41598_2025_116_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4222/12069630/cd96a28b24c0/41598_2025_116_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4222/12069630/5d39800ba370/41598_2025_116_Fig8_HTML.jpg

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本文引用的文献

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Automatic cortical surface parcellation in the fetal brain using attention-gated spherical U-net.使用注意力门控球形U型网络对胎儿大脑进行自动皮质表面分割。
Front Neurosci. 2024 May 30;18:1410936. doi: 10.3389/fnins.2024.1410936. eCollection 2024.
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Longitudinally consistent registration and parcellation of cortical surfaces using semi-supervised learning.使用半监督学习进行皮质表面的纵向一致配准和分割。
Med Image Anal. 2024 Aug;96:103193. doi: 10.1016/j.media.2024.103193. Epub 2024 May 7.
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Learning joint surface reconstruction and segmentation, from brain images to cortical surface parcellation.
学习关节表面重建与分割,从脑图像到皮质表面分区
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Anatomically constrained squeeze-and-excitation graph attention network for cortical surface parcellation.用于皮质表面分割的解剖学约束挤压与激励图注意力网络
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Geometric Brain Surface Network For Brain Cortical Parcellation.用于脑皮质分区的几何脑表面网络
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