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用于离子辐照下水辐射分解模拟的MPEXS2.1-DNA蒙特卡罗代码的最新更新。

Recent updates of the MPEXS2.1-DNA Monte Carlo code for simulations of water radiolysis under ion irradiation.

作者信息

Okada Shogo, Murakami Koichi, Kusumoto Tamon, Hirano Yoshiyuki, Amako Katsuya, Sasaki Takashi

机构信息

High Energy Accelerator Research Organization (KEK), 1-1, Oho, Tsukuba, Ibaraki, 305-0801, Japan.

National Institutes for Quantum Science and Technology (QST), 4-9-1 Anagawa, Inage-ku, Chiba, 263-8555, Japan.

出版信息

Sci Rep. 2025 May 13;15(1):16534. doi: 10.1038/s41598-025-00875-w.

Abstract

To improve radiotherapy, especially that with ion beams such as proton and carbon ion beams, the mechanisms of interactions induced by ionizing radiation must be understood. MPEXS2.1-DNA is a Monte Carlo simulation code developed for water radiolysis studies and DNA damage simulations that uses GPU devices for fast computation. However, the original chemistry model in MPEXS2.1-DNA did not include detailed chemical reactions for reactive oxygen species (ROS), e.g., O, O, O, HO, HO. In the present study, drawing the former work on the step-by-step (SBS) model for the RITRACKS code, we implemented an alternative SBS model into MPEXS2.1-DNA to increase the capabilities and computational speed of water radiolysis simulations under ion irradiation. This model is based on the theory of Green's function of the diffusion equation (GFDE-SBS). Also, we implemented multiple ionization processes which enhance ROS generation under high-LET irradiation. We compared the simulation results obtained by GFDE-SBS with experimental data from previous studies. The validation results demonstrated that the GFDE-SBS model accurately reproduced the measured radiation chemical yields of major species, such as hydroxyl radicals and hydrogen peroxide. Furthermore, the computational speed of GFDE-SBS was increased approximately ten times faster than the original model due to the changes in time stepping. Additionally, simulations using a Fricke dosimeter confirmed that this model is reliable for long-term simulations over seconds. These improvements enable simulations of radiation interactions and can help in the study of DNA damage mechanisms.

摘要

为了改进放射治疗,尤其是质子和碳离子束等离子束放疗,必须了解电离辐射诱导的相互作用机制。MPEXS2.1-DNA是一个为水辐射分解研究和DNA损伤模拟而开发的蒙特卡罗模拟代码,它使用GPU设备进行快速计算。然而,MPEXS2.1-DNA中的原始化学模型没有包括活性氧(ROS)的详细化学反应,例如O、O、O、HO、HO。在本研究中,借鉴之前为RITRACKS代码开发的逐步(SBS)模型的工作,我们在MPEXS2.1-DNA中实现了一个替代的SBS模型,以提高离子辐照下水辐射分解模拟的能力和计算速度。该模型基于扩散方程格林函数理论(GFDE-SBS)。此外,我们还实现了多个电离过程,这些过程可增强高传能线密度(LET)辐照下ROS的生成。我们将GFDE-SBS获得的模拟结果与先前研究的实验数据进行了比较。验证结果表明,GFDE-SBS模型准确地再现了主要物种(如羟基自由基和过氧化氢)的测量辐射化学产额。此外,由于时间步长的变化,GFDE-SBS的计算速度比原始模型快了约十倍。此外,使用弗里克剂量计的模拟证实,该模型对于长达数秒的长期模拟是可靠的。这些改进使得能够模拟辐射相互作用,并有助于研究DNA损伤机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56d6/12075733/a637cefbe20a/41598_2025_875_Fig1_HTML.jpg

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