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光开关DNA凝聚物的远程控制机械运动和定向运动。

Remote-controlled mechanical and directional motions of photoswitchable DNA condensates.

作者信息

Udono Hirotake, Nomura Shin-Ichiro M, Takinoue Masahiro

机构信息

Department of Computer Science, School of Computing, Institute of Science Tokyo, Yokohama, Kanagawa, 226-8501, Japan.

Department of Robotics, Graduate School of Engineering, Tohoku University, Sendai, Miyagi, 980-8579, Japan.

出版信息

Nat Commun. 2025 May 14;16(1):4479. doi: 10.1038/s41467-025-59100-x.

Abstract

Membrane-free synthetic DNA-based condensates enable programmable control of dynamic behaviors as shown by phase-separated condensates in biological cells. We demonstrate remote-controlled microflow using photocontrollable state transitions of DNA condensates, assembled from multi-branched DNA nanostructures via sticky-end (SE) hybridization. Introducing azobenzene into SEs enables their photoswitchable binding affinity, which underlies photoreversible fluidity of the resulting condensates that transition between gel/liquid/dissociated states in a wavelength-dependent manner. Leveraging base-sequence programmability, spatially coupled orthogonal DNA condensates with divergent photoresponsive capabilities perform multi-modal mechanical actions that depend on azobenzene insertion sites in the SE, including switching flows radially expanding and converging under photoswitching. Localizing photoswitching within a DNA liquid condensate generates two distinct directional motions, whose contrasting morphology, direction, and lifetime are determined by switching frequency. Numerical simulations reveal its regulatory role in weight-adjusting energy-exchanging and energy-dissipative interactions between the photoirradiated and unirradiated domains.

摘要

无膜合成DNA基凝聚物能够实现对动态行为的可编程控制,就像生物细胞中的相分离凝聚物所展示的那样。我们展示了利用DNA凝聚物的光控状态转变进行远程控制的微流,这些凝聚物是通过粘性末端(SE)杂交由多分支DNA纳米结构组装而成。将偶氮苯引入SE能够实现其光开关结合亲和力,这是所得凝聚物光可逆流动性的基础,凝聚物在凝胶/液体/解离状态之间以波长依赖的方式转变。利用碱基序列可编程性,具有不同光响应能力的空间耦合正交DNA凝聚物执行多模态机械作用,这些作用取决于SE中偶氮苯的插入位点,包括在光开关作用下切换径向扩展和汇聚的流动。在DNA液体凝聚物中定位光开关会产生两种不同的定向运动,其对比鲜明的形态、方向和寿命由切换频率决定。数值模拟揭示了其在光照射和未照射区域之间的重量调节能量交换和能量耗散相互作用中的调节作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/183b/12078559/7caa21309c2e/41467_2025_59100_Fig1_HTML.jpg

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