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从蛋白质组学和代谢组学角度研究成人重症社区获得性肺炎的宿主反应

Uncovering host response in adults with severe community-acquired pneumonia: a proteomics and metabolomics perspective study.

作者信息

Kuang Zhongshu, Li Runrong, Lu Su, Wang Yusong, Luo Yue, Shen Yongqi, Yuan Li, Yang Yilin, Song Zhenju, Jiang Ning, Tong Chaoyang

机构信息

1Department of Emergency Medicine, Zhongshan Hospital, Fudan University, Shanghai 200030, China.

2State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai 200030, China.

出版信息

World J Emerg Med. 2025 May 1;16(3):248-255. doi: 10.5847/wjem.j.1920-8642.2025.063.

DOI:10.5847/wjem.j.1920-8642.2025.063
PMID:40406290
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12093443/
Abstract

BACKGROUND

Community-acquired pneumonia (CAP) represents a significant public health concern due to its widespread prevalence and substantial healthcare costs. This study was to utilize an integrated proteomic and metabolomic approach to explore the mechanisms involved in severe CAP.

METHODS

We integrated proteomics and metabolomics data to identify potential biomarkers for early diagnosis of severe CAP. Plasma samples were collected from 46 CAP patients (including 27 with severe CAP and 19 with non-severe CAP) and 19 healthy controls upon admission. A comprehensive analysis of the combined proteomics and metabolomics data was then performed to elucidate the key pathological features associated with CAP severity.

RESULTS

The proteomic and metabolic signature was markedly different between CAPs and healthy controls. Pathway analysis of changes revealed complement and coagulation cascades, ribosome, tumor necrosis factor (TNF) signaling pathway and lipid metabolic process as contributors to CAP. Furthermore, alterations in lipid metabolism, including sphingolipids and phosphatidylcholines (PCs), and dysregulation of cadherin binding were observed, potentially contributing to the development of severe CAP. Specifically, within the severe CAP group, sphingosine-1-phosphate (S1P) and apolipoproteins (APOC1 and APOA2) levels were downregulated, while S100P level was significantly upregulated.

CONCLUSION

The combined proteomic and metabolomic analysis may elucidate the complexity of CAP severity and inform the development of improved diagnostic tools.

摘要

背景

社区获得性肺炎(CAP)因其广泛流行和高昂的医疗成本而成为重大的公共卫生问题。本研究旨在利用蛋白质组学和代谢组学相结合的方法来探索重症CAP所涉及的机制。

方法

我们整合蛋白质组学和代谢组学数据,以确定用于早期诊断重症CAP的潜在生物标志物。在入院时从46例CAP患者(包括27例重症CAP患者和19例非重症CAP患者)以及19名健康对照者中采集血浆样本。然后对蛋白质组学和代谢组学的综合数据进行全面分析,以阐明与CAP严重程度相关的关键病理特征。

结果

CAP患者与健康对照者之间的蛋白质组学和代谢特征存在显著差异。对变化进行的通路分析显示,补体和凝血级联反应、核糖体、肿瘤坏死因子(TNF)信号通路以及脂质代谢过程与CAP有关。此外,观察到脂质代谢的改变,包括鞘脂和磷脂酰胆碱(PCs),以及钙黏蛋白结合失调,这可能导致重症CAP的发生。具体而言,在重症CAP组中,1-磷酸鞘氨醇(S1P)和载脂蛋白(APOC1和APOA2)水平下调,而S100P水平显著上调。

结论

蛋白质组学和代谢组学的联合分析可能阐明CAP严重程度的复杂性,并为改进诊断工具的开发提供信息。

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本文引用的文献

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World J Emerg Med. 2024;15(4):263-272. doi: 10.5847/wjem.j.1920-8642.2024.033.
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Integrative multi-omics analysis unravels the host response landscape and reveals a serum protein panel for early prognosis prediction for ARDS.整合多组学分析揭示了宿主反应图谱,并发现了一个用于 ARDS 早期预后预测的血清蛋白质谱。
Crit Care. 2024 Jul 2;28(1):213. doi: 10.1186/s13054-024-05000-3.
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MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation.MetaboAnalyst 6.0:迈向代谢组学数据处理、分析和解释的统一平台。
Nucleic Acids Res. 2024 Jul 5;52(W1):W398-W406. doi: 10.1093/nar/gkae253.
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Current status of Mycoplasma pneumoniae infection in China.中国肺炎支原体感染的现状
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HSP90AB1 is a host factor that promotes porcine deltacoronavirus replication.HSP90AB1 是一种促进猪德尔塔冠状病毒复制的宿主因子。
J Biol Chem. 2024 Jan;300(1):105536. doi: 10.1016/j.jbc.2023.105536. Epub 2023 Dec 12.
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HSP90AB1 Is a Host Factor Required for Transmissible Gastroenteritis Virus Infection.热休克蛋白 90AB1 是传染性胃肠炎病毒感染所必需的宿主因子。
Int J Mol Sci. 2023 Nov 4;24(21):15971. doi: 10.3390/ijms242115971.
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Sequential multi-omics analysis identifies clinical phenotypes and predictive biomarkers for long COVID.序贯多组学分析确定长新冠的临床表型和预测生物标志物。
Cell Rep Med. 2023 Nov 21;4(11):101254. doi: 10.1016/j.xcrm.2023.101254. Epub 2023 Oct 26.
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MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis.MBROLE3:改进代谢组学数据分析中化合物的功能富集。
Nucleic Acids Res. 2023 Jul 5;51(W1):W305-W309. doi: 10.1093/nar/gkad405.
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