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用于预测肝细胞癌预后和免疫治疗反应的APM相关基因特征模型

APM-Related gene signature model to predict prognosis and immunotherapy response in hepatocellular carcinoma.

作者信息

Zhang Shangdi, Du Kewei, Gao Shan, Liu Zejing, Chen Linmei, Wu Xue, Li Linjing

机构信息

Laboratory Medicine Center, The Second Hospital & Clinical Medical School, Lanzhou University, Lanzhou, 730030, China.

Cuiying Biomedical Research Center, The Second Hospital & Clinical Medical School, Lanzhou University, Lanzhou, 730030, China.

出版信息

Hum Genet. 2025 May 27. doi: 10.1007/s00439-025-02753-x.

DOI:10.1007/s00439-025-02753-x
PMID:40423787
Abstract

Hepatocellular carcinoma (HCC) is a primary liver malignancy with a dismal prognosis. This study established and validated a prognostic model based on antigen-processing and presenting machinery (APM)-related genes through Mendelian randomization and publicly available datasets. Systematic analysis revealed CXCL5, SGPP2, and GLP1R as critical prognostic biomarkers, which were subsequently integrated into a risk model. The model demonstrated significant associations with pathways linked to bile acid, fatty acid, and amino acid metabolism, alongside variations in immune cell infiltration and genomic mutations, including TTN, TP53, and MUC16. Patient stratification into high- and low-risk groups indicated that low-risk individuals exhibited reduced immune infiltration, potentially correlating with enhanced immunotherapy sensitivity. These findings offer a robust gene signature for HCC prognosis and a framework for evaluating responses to immunotherapy.

摘要

肝细胞癌(HCC)是一种预后不佳的原发性肝脏恶性肿瘤。本研究通过孟德尔随机化和公开可用数据集,建立并验证了一种基于抗原加工和呈递机制(APM)相关基因的预后模型。系统分析显示CXCL5、SGPP2和GLP1R为关键的预后生物标志物,随后将其整合到一个风险模型中。该模型显示与胆汁酸、脂肪酸和氨基酸代谢相关的通路存在显著关联,同时免疫细胞浸润和基因组突变(包括TTN、TP53和MUC16)也存在差异。将患者分层为高风险和低风险组表明,低风险个体的免疫浸润减少,这可能与免疫治疗敏感性增强相关。这些发现为HCC预后提供了一个强大的基因特征,并为评估免疫治疗反应提供了一个框架。

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本文引用的文献

1
Non-alcoholic fatty liver disease and heart failure: A comprehensive bioinformatics and Mendelian randomization analysis.非酒精性脂肪性肝病与心力衰竭:一项全面的生物信息学和孟德尔随机化分析
ESC Heart Fail. 2024 Dec;11(6):4185-4200. doi: 10.1002/ehf2.15019. Epub 2024 Aug 14.
2
Comprehensive analysis of MAPK genes in the prognosis, immune characteristics, and drug treatment of renal clear cell carcinoma using bioinformatic analysis and Mendelian randomization.采用生物信息学分析和孟德尔随机化方法对肾透明细胞癌中 MAPK 基因的预后、免疫特征和药物治疗进行综合分析。
Eur J Pharmacol. 2024 Oct 5;980:176840. doi: 10.1016/j.ejphar.2024.176840. Epub 2024 Jul 20.
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Targeting N4-acetylcytidine suppresses hepatocellular carcinoma progression by repressing eEF2-mediated HMGB2 mRNA translation.
靶向 N4-乙酰胞苷通过抑制 eEF2 介导的 HMGB2 mRNA 翻译抑制肝细胞癌进展。
Cancer Commun (Lond). 2024 Sep;44(9):1018-1041. doi: 10.1002/cac2.12595. Epub 2024 Jul 19.
4
Extracellular RNA Induces Neutrophil Recruitment Via Toll-Like Receptor 3 During Venous Thrombosis After Vascular Injury.细胞外 RNA 通过血管损伤后静脉血栓形成期间的 Toll 样受体 3 诱导中性粒细胞募集。
J Am Heart Assoc. 2024 Aug 6;13(15):e034492. doi: 10.1161/JAHA.124.034492. Epub 2024 Jul 19.
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GLP-1R agonist therapy and vaccine response: Neglected implications.GLP-1R 激动剂治疗与疫苗反应:被忽视的影响。
Cytokine Growth Factor Rev. 2024 Aug;78:14-24. doi: 10.1016/j.cytogfr.2024.07.006. Epub 2024 Jul 15.
6
Applications of single-cell multi-omics in liver cancer.单细胞多组学在肝癌中的应用。
JHEP Rep. 2024 Apr 15;6(7):101094. doi: 10.1016/j.jhepr.2024.101094. eCollection 2024 Jul.
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Inhibiting HMGCR represses stemness and metastasis of hepatocellular carcinoma via Hedgehog signaling.抑制3-羟基-3-甲基戊二酰辅酶A还原酶通过刺猬信号通路抑制肝细胞癌的干性和转移。
Genes Dis. 2024 Apr 3;11(5):101285. doi: 10.1016/j.gendis.2024.101285. eCollection 2024 Sep.
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Liver Cancer. 2023 Oct 30;13(4):344-354. doi: 10.1159/000534446. eCollection 2024 Aug.
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Pathog Glob Health. 2024 Jul;118(5):408-417. doi: 10.1080/20477724.2024.2365581. Epub 2024 Jun 17.
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